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README.md

tile

modules for doing single tile level operations

create_filtered_EM_images

This is a module for post-processing EM imagery that contains burn marks and diversity in image contrast. It does a series of constrast normalization, median filtering, and clahe to produce a crisp even level of background. It was optimized on two of the Allen Institute's FESEM datasets taken on a Gemini 500 with mild levels of hyrdocarbon deposition (burn lines). Probably useful as a general pattern for applying opencv based image processing steps on sets of tiles that are stored in render.