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Andreas Prlic
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structure/README.md

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@@ -3,6 +3,24 @@ The Protein Structure Modules of BioJava
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A tutorial for the protein structure modules of BioJava
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## About
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<table>
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<tr>
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<td>
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<img src="img/4hhb_jmol.png"/>
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</td>
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<td>
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The BioJava protein structure modules provide an API that allows to
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<ul>
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<li>Maintain local installations of PDB</li>
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<li>Load structures and manipulate them</li>
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<li>Perform standard analysis such as sequence and structure alignments</li>
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<li>Visualize structures</li>
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</td>
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</tr>
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</table>
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## Index
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This tutorial is split into several chapters.

structure/firststeps.md

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public static void main(String[] args){
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try {
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Structure structure = StructureIO.getBiologicalAssembly("4HHB");
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Structure structure = StructureIO.getBiologicalAssembly("1GAV");
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// and let's print out how many atoms are in this structure
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System.out.println(StructureTools.getNrAtoms(structure));
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} catch (Exception e){

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