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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -3,6 +3,24 @@ The Protein Structure Modules of BioJava
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44A tutorial for the protein structure modules of BioJava
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6+ ## About
7+ <table >
8+ <tr>
9+ <td>
10+ <img src="img/4hhb_jmol.png"/>
11+ </td>
12+ <td>
13+ The BioJava protein structure modules provide an API that allows to
14+ <ul>
15+ <li>Maintain local installations of PDB</li>
16+ <li>Load structures and manipulate them</li>
17+ <li>Perform standard analysis such as sequence and structure alignments</li>
18+ <li>Visualize structures</li>
19+
20+ </td>
21+ </tr>
22+ </table >
23+
624## Index
725
826This tutorial is split into several chapters.
Original file line number Diff line number Diff line change @@ -90,7 +90,7 @@ By default many people work with the *asymmetric unit* of a protein. However for
9090 public static void main(String[] args){
9191
9292 try {
93- Structure structure = StructureIO.getBiologicalAssembly("4HHB ");
93+ Structure structure = StructureIO.getBiologicalAssembly("1GAV ");
9494 // and let's print out how many atoms are in this structure
9595 System.out.println(StructureTools.getNrAtoms(structure));
9696 } catch (Exception e){
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