From fb884eab54d81cf822b501f03da0a0e8b9d76608 Mon Sep 17 00:00:00 2001 From: Jillian Rowe Date: Mon, 27 Aug 2018 08:27:32 +0300 Subject: [PATCH 1/5] commit --- .idea/BioX-Workflow-Command-REST.iml | 11 + .idea/markdown-navigator.xml | 78 +++++ .../markdown-navigator/profiles_settings.xml | 3 + .idea/misc.xml | 4 + .idea/modules.xml | 8 + .idea/perl5local.xml | 6 + .idea/vcs.xml | 6 + .idea/workspace.xml | 278 ++++++++++++++++++ lib/BioX/Workflow/Command/REST/run.pm | 46 +-- 9 files changed, 418 insertions(+), 22 deletions(-) create mode 100644 .idea/BioX-Workflow-Command-REST.iml create mode 100644 .idea/markdown-navigator.xml create mode 100644 .idea/markdown-navigator/profiles_settings.xml create mode 100644 .idea/misc.xml create mode 100644 .idea/modules.xml create mode 100644 .idea/perl5local.xml create mode 100644 .idea/vcs.xml create mode 100644 .idea/workspace.xml diff --git a/.idea/BioX-Workflow-Command-REST.iml b/.idea/BioX-Workflow-Command-REST.iml new file mode 100644 index 0000000..6711606 --- /dev/null +++ b/.idea/BioX-Workflow-Command-REST.iml @@ -0,0 +1,11 @@ + + + + + + + + + + \ No newline at end of file diff --git a/.idea/markdown-navigator.xml b/.idea/markdown-navigator.xml new file mode 100644 index 0000000..7753d6d --- /dev/null +++ b/.idea/markdown-navigator.xml @@ -0,0 +1,78 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/.idea/markdown-navigator/profiles_settings.xml b/.idea/markdown-navigator/profiles_settings.xml new file mode 100644 index 0000000..57927c5 --- /dev/null +++ b/.idea/markdown-navigator/profiles_settings.xml @@ -0,0 +1,3 @@ + + + \ No newline at end of file diff --git a/.idea/misc.xml b/.idea/misc.xml new file mode 100644 index 0000000..59ab37d --- /dev/null +++ b/.idea/misc.xml @@ -0,0 +1,4 @@ + + + + \ No newline at end of file diff --git a/.idea/modules.xml b/.idea/modules.xml new file mode 100644 index 0000000..18bfa91 --- /dev/null +++ b/.idea/modules.xml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/.idea/perl5local.xml b/.idea/perl5local.xml new file mode 100644 index 0000000..143819f --- /dev/null +++ b/.idea/perl5local.xml @@ -0,0 +1,6 @@ + + + + + \ No newline at end of file diff --git a/.idea/vcs.xml b/.idea/vcs.xml new file mode 100644 index 0000000..94a25f7 --- /dev/null +++ b/.idea/vcs.xml @@ -0,0 +1,6 @@ + + + + + + \ No newline at end of file diff --git a/.idea/workspace.xml b/.idea/workspace.xml new file mode 100644 index 0000000..c6b6146 --- /dev/null +++ b/.idea/workspace.xml @@ -0,0 +1,278 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + DEFINITION_ORDER + + + + + + + + + + + + GeneralJavaScript + + + JavaScript + + + Pyramid + + + Python + + + + + AngularJS + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - 1528707143971 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file diff --git a/README.md b/README.md index f94e766..065f5d1 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ BioX::Workflow::Command::REST - REST API for BioX::Workflow::Command # SYNOPSIS This is an extremely beta release - plackup -E deployment -s Starman -p 3001 -r -R `pwd`/lib -a script/biox-app.psgi + plackup -E deployment -s Starman -p 3001 -r -R $(pwd)/lib -a script/biox-app.psgi # DESCRIPTION From 398a4952a5a31d57628e2e1e652c4f7903671090 Mon Sep 17 00:00:00 2001 From: Jillian Rowe Date: Mon, 27 Aug 2018 08:29:51 +0300 Subject: [PATCH 3/5] commit --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 065f5d1..89ce1a6 100644 --- a/README.md +++ b/README.md @@ -11,6 +11,8 @@ BioX::Workflow::Command::REST - REST API for BioX::Workflow::Command BioX::Workflow::Command::REST exposes a REST API for BioX::Workflow::Command +This is hopefully the 1.0 version + # AUTHOR Jillian Rowe From 63fd0051579f90f46035ed2f2c74d0d8249453e1 Mon Sep 17 00:00:00 2001 From: Jillian Rowe Date: Mon, 27 Aug 2018 09:04:23 +0300 Subject: [PATCH 4/5] refactoring --- .idea/BioX-Workflow-Command-REST.iml | 11 + .idea/markdown-navigator.xml | 78 +++++++ .../markdown-navigator/profiles_settings.xml | 3 + .idea/misc.xml | 4 + .idea/modules.xml | 8 + .idea/perl5local.xml | 6 + .idea/vcs.xml | 6 + .idea/workspace.xml | 206 ++++++++++++++++++ lib/BioX/Workflow/Command/REST/run.pm | 2 +- 9 files changed, 323 insertions(+), 1 deletion(-) create mode 100644 .idea/BioX-Workflow-Command-REST.iml create mode 100644 .idea/markdown-navigator.xml create mode 100644 .idea/markdown-navigator/profiles_settings.xml create mode 100644 .idea/misc.xml create mode 100644 .idea/modules.xml create mode 100644 .idea/perl5local.xml create mode 100644 .idea/vcs.xml create mode 100644 .idea/workspace.xml diff --git a/.idea/BioX-Workflow-Command-REST.iml b/.idea/BioX-Workflow-Command-REST.iml new file mode 100644 index 0000000..6711606 --- /dev/null +++ b/.idea/BioX-Workflow-Command-REST.iml @@ -0,0 +1,11 @@ + + + + + + + + + + \ No newline at end of file diff --git a/.idea/markdown-navigator.xml b/.idea/markdown-navigator.xml new file mode 100644 index 0000000..076726f --- /dev/null +++ b/.idea/markdown-navigator.xml @@ -0,0 +1,78 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/.idea/markdown-navigator/profiles_settings.xml b/.idea/markdown-navigator/profiles_settings.xml new file mode 100644 index 0000000..57927c5 --- /dev/null +++ b/.idea/markdown-navigator/profiles_settings.xml @@ -0,0 +1,3 @@ + + + \ No newline at end of file diff --git a/.idea/misc.xml b/.idea/misc.xml new file mode 100644 index 0000000..9545415 --- /dev/null +++ b/.idea/misc.xml @@ -0,0 +1,4 @@ + + + + \ No newline at end of file diff --git a/.idea/modules.xml b/.idea/modules.xml new file mode 100644 index 0000000..18bfa91 --- /dev/null +++ b/.idea/modules.xml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/.idea/perl5local.xml b/.idea/perl5local.xml new file mode 100644 index 0000000..143819f --- /dev/null +++ b/.idea/perl5local.xml @@ -0,0 +1,6 @@ + + + + + \ No newline at end of file diff --git a/.idea/vcs.xml b/.idea/vcs.xml new file mode 100644 index 0000000..94a25f7 --- /dev/null +++ b/.idea/vcs.xml @@ -0,0 +1,6 @@ + + + + + + \ No newline at end of file diff --git a/.idea/workspace.xml b/.idea/workspace.xml new file mode 100644 index 0000000..42390d0 --- /dev/null +++ b/.idea/workspace.xml @@ -0,0 +1,206 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + DEFINITION_ORDER + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - 1535349575881 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file