/* Demo code to run the above methods */

jjgao · andreasprlic · commit f4ff4567007e · 2016-04-09T10:59:33.000-07:00
diff --git a/_wikis/BioJava:CookBook3:ModFinder.md b/_wikis/BioJava:CookBook3:ModFinder.md
@@ -66,8 +66,8 @@ public static void main(String[] args) {
 `       }`
 
 `       // identify all phosphosites from PDB:3MVJ and print them`  
-`       String pdbId = "3MVJ";`  
-`       Structure struc = reader.getStructureById(pdbId);`  
+`       pdbId = "3MVJ";`  
+`       struc = reader.getStructureById(pdbId);`  
 `       List`<ResidueNumber>` psites = identifyPhosphosites(struc);`  
 `       for (ResidueNumber psite : psites) {`  
 `           System.out.println(psite.toString());`  
diff --git a/_wikis/BioJava:CookBook3:ModFinder.mediawiki b/_wikis/BioJava:CookBook3:ModFinder.mediawiki
@@ -50,8 +50,8 @@ public static void main(String[] args) {
 		}
 
 		// identify all phosphosites from PDB:3MVJ and print them
-		String pdbId = "3MVJ";
-		Structure struc = reader.getStructureById(pdbId);
+		pdbId = "3MVJ";
+		struc = reader.getStructureById(pdbId);
 		List<ResidueNumber> psites = identifyPhosphosites(struc);
 		for (ResidueNumber psite : psites) {
 			System.out.println(psite.toString());
