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/* Legacy BioJava 1.8 */
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‎_wikis/BioJava:Modules.md‎

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@@ -68,30 +68,25 @@ Module: biojava-biosql Lead: Richard Holland
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Module: biojava-das : Lead: Jonathan Warren
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`- probably deprecate the old DAS code in BJ and replace it with`
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`= the up to date Dasobert library`
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`-update dasobert code to 1.6 and make smaller`
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`-add further support for getting new information contained in the registry (validation, on the fly validation, sources by types and cvId).`
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`- probably deprecate the old DAS code in BJ and replace it with the up to date Dasobert library`
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`- update dasobert code to 1.6 and make smaller`
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`- add further support for getting new information contained in the registry (validation, on the fly validation, sources by types and cvId).`
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Module: biojava-structure Lead: Andreas Prlic
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`- add secondary structure assignment`
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`- better integration with 3D viewers (Jmol, RCSB viewers)`
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Module: biojava-sequencing Lead: Michael Heuer
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`- merge FASTQ support from 1.7.1 branch to trunk`
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`- provide facade for Fastq --> Biojava sequence with quality scores`
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`- review FASTQ IO interfaces, compare design with Richard's biojava3`
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Module: biojava-web services:
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`- The details seem still to be under discussion and perhaps we need multiple modules here?`
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`- also what about REST vs. SOAP? To be discussed. People who expressed interest are:`
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`- Niall Haslam,Scooter Willis, Sylvain Foisy`
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Module?: biojava-ws-blast Module?: biojava-ws-biolit
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Module?: biojava-ws-blast
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Module?: biojava-ws-biolit
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Proposed Module: biojava-j2ee Lead: Mark Schreiber
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`- This would probably take the form of SessionBeans and WebServices that can be deployed to Glassfish/ JBoss etc to provide biological services  for people who want to make client server or SOA apps.`
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`- This would probably take the form of SessionBeans and WebServices that can be deployed to Glassfish/ JBoss etc to provide biological services for people who want to make client server or SOA apps.`

‎_wikis/BioJava:Modules.mediawiki‎

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- Mark Schreiber wants to work on BioSQL/ JPA bindings
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Module: biojava-das : Lead: Jonathan Warren
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- probably deprecate the old DAS code in BJ and replace it with
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= the up to date Dasobert library
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-update dasobert code to 1.6 and make smaller
58-
-add further support for getting new information contained in the registry (validation, on the fly validation, sources by types and cvId).
55+
- probably deprecate the old DAS code in BJ and replace it with the up to date Dasobert library
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- update dasobert code to 1.6 and make smaller
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- add further support for getting new information contained in the registry (validation, on the fly validation, sources by types and cvId).
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Module: biojava-structure Lead: Andreas Prlic
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- add secondary structure assignment
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- better integration with 3D viewers (Jmol, RCSB viewers)
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Module: biojava-sequencing Lead: Michael Heuer
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- merge FASTQ support from 1.7.1 branch to trunk
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- provide facade for Fastq --> Biojava sequence with quality scores
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- review FASTQ IO interfaces, compare design with Richard's biojava3
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Module: biojava-web services:
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- The details seem still to be under discussion and perhaps we need multiple modules here?
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- also what about REST vs. SOAP? To be discussed. People who expressed interest are:
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- Niall Haslam,Scooter Willis, Sylvain Foisy
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Module?: biojava-ws-blast
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Module?: biojava-ws-biolit
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Proposed Module: biojava-j2ee Lead: Mark Schreiber
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- This would probably take the form of SessionBeans and WebServices that can be deployed to Glassfish/ JBoss etc to provide biological services for people who want to make client server or SOA apps.
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- This would probably take the form of SessionBeans and WebServices that can be deployed to Glassfish/ JBoss etc to provide biological services for people who want to make client server or SOA apps.

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