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‎_wikis/BioJava:CookBook:PDB:bioassembly.md‎

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@@ -10,6 +10,16 @@ For more information about the differences between the asymmetric unit
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and the biological assembly see [a tutorial at RCSB
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PDB](http://www.pdb.org/pdb/101/static101.do?p=education_discussion/Looking-at-Structures/bioassembly_tutorial.html)
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An comparison of the asymmetric unit and the biological assembly of
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Streptavidin is shown in this screenshot: It compares the asymmetric
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unit of [PDB ID
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1STP](http://www.rcsb.org/pdb/explore/explore.do?structureId=1stp) (left
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side) with its biological assembly (right side).
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![](Asym_biounit.png "Asym_biounit.png")
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Here some example code how to load the biological assembly:
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<java>
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`           // good examples: 1stp 1gav 1hv4 1hho 7dfr 3fad  1qqp`
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`           `
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`           // DNA 173D .. 2`
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`           `
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`           BioUnitDataProviderFactory.setBioUnitDataProvider(BioUnitDataProviderFactory.pdbProviderClassName);`
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`           // we load the bio assembly info out of the PDB files`
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`           BioUnitDataProviderFactory.setBioUnitDataProvider(BioUnitDataProviderFactory.pdbProviderClassName);`
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`           //Structure bioAssembly = StructureIO.getBiologicalAssembly("4A1I",2);  `
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`           `
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`           Structure bioAssembly = StructureIO.getBiologicalAssembly("1ei7",1);`

‎_wikis/BioJava:CookBook:PDB:bioassembly.mediawiki‎

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@@ -3,7 +3,11 @@ Since BioJava 3.0.5 the protein structure modules can parse the biological assem
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For more information about the differences between the asymmetric unit and the biological assembly see
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[http://www.pdb.org/pdb/101/static101.do?p=education_discussion/Looking-at-Structures/bioassembly_tutorial.html a tutorial at RCSB PDB]
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An comparison of the asymmetric unit and the biological assembly of Streptavidin is shown in this screenshot: It compares the asymmetric unit of [http://www.rcsb.org/pdb/explore/explore.do?structureId=1stp PDB ID 1STP] (left side) with its biological assembly (right side).
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[[Image:Asym_biounit.png]]
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Here some example code how to load the biological assembly:
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<java>
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// good examples: 1stp 1gav 1hv4 1hho 7dfr 3fad 1qqp
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// DNA 173D .. 2
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// we load the bio assembly info out of the PDB files
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BioUnitDataProviderFactory.setBioUnitDataProvider(BioUnitDataProviderFactory.pdbProviderClassName);
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//Structure bioAssembly = StructureIO.getBiologicalAssembly("4A1I",2);
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Structure bioAssembly = StructureIO.getBiologicalAssembly("1ei7",1);

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