diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..9d8fc46
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,20 @@
+name: CI
+
+on: pull_request
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-java@v2
+        with:
+          java-version: '11'
+          distribution: 'temurin'
+      - uses: actions/cache@v2
+        with:
+          path: ~/.m2
+          key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
+          restore-keys: ${{ runner.os }}-m2
+      - run: mvn --batch-mode --update-snapshots clean package
diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
new file mode 100644
index 0000000..6b95963
--- /dev/null
+++ b/.github/workflows/deploy.yml
@@ -0,0 +1,29 @@
+name: Deploy Snapshot
+
+on:
+  push:
+    branches:
+    - master
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    if: ${{ github.repository == 'biojava/biojava-adam' }}
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-java@v2
+        with:
+          java-version: '11'
+          distribution: 'temurin'
+          server-id: sonatype-nexus-snapshots
+          server-username: MAVEN_USERNAME
+          server-password: MAVEN_PASSWORD
+      - uses: actions/cache@v2
+        with:
+          path: ~/.m2
+          key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
+          restore-keys: ${{ runner.os }}-m2
+      - env:
+          MAVEN_USERNAME: ${{ secrets.OSS_SONATYPE_USERNAME }}
+          MAVEN_PASSWORD: ${{ secrets.OSS_SONATYPE_PASSWORD }}
+        run: mvn --batch-mode -DskipTests=true deploy
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 2f2ab4f..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1,6 +0,0 @@
-language: java
-jdk:
-  - openjdk8
-cache:
-  directories:
-    - $HOME/.m2
diff --git a/HEADER.txt b/HEADER.txt
index 9ab8bd9..0b33821 100644
--- a/HEADER.txt
+++ b/HEADER.txt
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/README.md b/README.md
index bfacc91..c2dc7e4 100644
--- a/README.md
+++ b/README.md
@@ -13,8 +13,8 @@ Install
 
  * JDK 1.8 or later, http://openjdk.java.net
  * Apache Maven 3.6.3 or later, http://maven.apache.org
- * Apache Spark 3.0.2 or later, http://spark.apache.org
- * ADAM: Genomic Data System 0.34.0 or later, https://github.com/bigdatagenomics/adam
+ * Apache Spark 3.2.1 or later, http://spark.apache.org
+ * ADAM: Genomic Data System 1.0 or later, https://github.com/bigdatagenomics/adam
 
 To build
 
@@ -35,10 +35,10 @@ Welcome to
       ____              __
      / __/__  ___ _____/ /__
     _\ \/ _ \/ _ `/ __/  '_/
-   /___/ .__/\_,_/_/ /_/\_\   version 3.0.2
+   /___/ .__/\_,_/_/ /_/\_\   version 3.2.1
       /_/
 
-Using Scala version 2.12.10 (Java HotSpot(TM) 64-Bit Server VM, Java 1.8.0_191)
+Using Scala version 2.12.15 (Java HotSpot(TM) 64-Bit Server VM, Java 1.8.0_191)
 Type in expressions to have them evaluated.
 Type :help for more information.
 
diff --git a/pom.xml b/pom.xml
index 1eae007..a4a34d5 100644
--- a/pom.xml
+++ b/pom.xml
@@ -2,7 +2,7 @@
 <!--
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -33,7 +33,7 @@
   <artifactId>biojava-adam</artifactId>
   <packaging>jar</packaging>
   <name>biojava-adam</name>
-  <version>0.7.0</version>
+  <version>1.1-SNAPSHOT</version>
   <description>Biojava and ADAM integration.</description>
   <url>http://www.biojava.org</url>
   <inceptionYear>2017</inceptionYear>
@@ -41,7 +41,7 @@
     <connection>scm:git:git@github.com:biojava/biojava-adam.git</connection>
     <developerConnection>scm:git:git@github.com:biojava/biojava-adam.git</developerConnection>
     <url>git@github.com:biojava/biojava-adam.git</url>
-    <tag>biojava-adam-0.7.0</tag>
+    <tag>HEAD</tag>
   </scm>
   <developers>
     <developer>
@@ -61,19 +61,20 @@
     </license>
   </licenses>
   <properties>
-    <adam.version>0.35.0</adam.version>
-    <bdg-convert.version>0.11.0</bdg-convert.version>
-    <biojava.version>5.4.0</biojava.version>
+    <adam.version>1.0</adam.version>
+    <bdg-convert.version>1.0</bdg-convert.version>
+    <biojava.version>6.1.0</biojava.version>
+    <guava.version>31.1-jre</guava.version>
     <jdk.version>1.8</jdk.version>
     <junit.version>4.13.2</junit.version>
     <maven.enforcer.jdk-version>[1.8,)</maven.enforcer.jdk-version>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
     <project.build.targetEncoding>UTF-8</project.build.targetEncoding>
-    <scala-guice.version>4.2.6</scala-guice.version>
-    <scala.version>2.12.10</scala.version>
+    <scala-guice.version>5.1.0</scala-guice.version>
+    <scala.version>2.12.15</scala.version>
     <scala.version.prefix>2.12</scala.version.prefix>
     <slf4j.version>1.7.30</slf4j.version>
-    <spark.version>3.0.2</spark.version>
+    <spark.version>3.2.1</spark.version>
   </properties>
   <build>
     <pluginManagement>
@@ -145,7 +146,7 @@
         <plugin>
           <groupId>net.alchim31.maven</groupId>
           <artifactId>scala-maven-plugin</artifactId>
-          <version>4.4.1</version>
+          <version>4.5.6</version>
         </plugin>
         <plugin>
           <groupId>org.codehaus.mojo</groupId>
@@ -344,10 +345,6 @@
             <groupId>com.google.code.findbugs</groupId>
             <artifactId>jsr305</artifactId>
           </exclusion>
-          <exclusion>
-            <groupId>com.google.inject</groupId>
-            <artifactId>guice</artifactId>
-          </exclusion>
           <exclusion>
             <groupId>org.apache.avro</groupId>
             <artifactId>avro</artifactId>
@@ -377,6 +374,10 @@
         <groupId>org.biojava</groupId>
         <artifactId>biojava-genome</artifactId>
         <exclusions>
+          <exclusion>
+            <groupId>com.google.guava</groupId>
+            <artifactId>*</artifactId>
+          </exclusion>
           <exclusion>
             <groupId>org.apache.logging.log4j</groupId>
             <artifactId>*</artifactId>
@@ -393,6 +394,11 @@
         <artifactId>slf4j-log4j12</artifactId>
         <version>${slf4j.version}</version>
       </dependency>
+      <dependency>
+        <groupId>com.google.guava</groupId>
+        <artifactId>guava</artifactId>
+        <version>${guava.version}</version>
+      </dependency>
     </dependencies>
   </dependencyManagement>
   <dependencies>
diff --git a/scripts/loadFastaDna.scala b/scripts/loadFastaDna.scala
index 1739410..d30e0d5 100644
--- a/scripts/loadFastaDna.scala
+++ b/scripts/loadFastaDna.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadFastaProtein.scala b/scripts/loadFastaProtein.scala
index 94bcc0d..a7d2b8c 100644
--- a/scripts/loadFastaProtein.scala
+++ b/scripts/loadFastaProtein.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadFastaRna.scala b/scripts/loadFastaRna.scala
index 493618c..359a604 100644
--- a/scripts/loadFastaRna.scala
+++ b/scripts/loadFastaRna.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadFastqReads.scala b/scripts/loadFastqReads.scala
index 28f6cca..63f96da 100644
--- a/scripts/loadFastqReads.scala
+++ b/scripts/loadFastqReads.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadGenbankDna.scala b/scripts/loadGenbankDna.scala
index db7131e..a8aa2ab 100644
--- a/scripts/loadGenbankDna.scala
+++ b/scripts/loadGenbankDna.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadGenbankDnaFeatures.scala b/scripts/loadGenbankDnaFeatures.scala
index f3c9de8..3d3801f 100644
--- a/scripts/loadGenbankDnaFeatures.scala
+++ b/scripts/loadGenbankDnaFeatures.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadGenbankProtein.scala b/scripts/loadGenbankProtein.scala
index 2b8acd4..85faab5 100644
--- a/scripts/loadGenbankProtein.scala
+++ b/scripts/loadGenbankProtein.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadGenbankProteinFeatures.scala b/scripts/loadGenbankProteinFeatures.scala
index e0c8d3b..6e44686 100644
--- a/scripts/loadGenbankProteinFeatures.scala
+++ b/scripts/loadGenbankProteinFeatures.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadGenbankRna.scala b/scripts/loadGenbankRna.scala
index 7461f4d..0fbcf20 100644
--- a/scripts/loadGenbankRna.scala
+++ b/scripts/loadGenbankRna.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/scripts/loadGenbankRnaFeatures.scala b/scripts/loadGenbankRnaFeatures.scala
index 9d37189..4481bb0 100644
--- a/scripts/loadGenbankRnaFeatures.scala
+++ b/scripts/loadGenbankRnaFeatures.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  BioJava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -34,7 +34,7 @@ val bac = BiojavaAdamContext(sc)
 val inputPath = Option(System.getenv("INPUT"))
 val outputPath = Option(System.getenv("OUTPUT"))
 
-if (!inputPath.isDefined || !outputPath.isDefined) {
+if (inputPath.isEmpty || outputPath.isEmpty) {
   logger.error("INPUT and OUTPUT environment variables are required")
   System.exit(1)
 }
diff --git a/src/main/java/org/biojava/nbio/adam/BiojavaKryoRegistrator.java b/src/main/java/org/biojava/nbio/adam/BiojavaKryoRegistrator.java
index 953042a..7535429 100644
--- a/src/main/java/org/biojava/nbio/adam/BiojavaKryoRegistrator.java
+++ b/src/main/java/org/biojava/nbio/adam/BiojavaKryoRegistrator.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/UnmodifiableCollectionsSerializer.java b/src/main/java/org/biojava/nbio/adam/UnmodifiableCollectionsSerializer.java
index 7565eca..22f6905 100644
--- a/src/main/java/org/biojava/nbio/adam/UnmodifiableCollectionsSerializer.java
+++ b/src/main/java/org/biojava/nbio/adam/UnmodifiableCollectionsSerializer.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/BiojavaModule.java b/src/main/java/org/biojava/nbio/adam/convert/BiojavaModule.java
index 8dbbbdd..5a39e0a 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/BiojavaModule.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/BiojavaModule.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -32,11 +32,8 @@
 import com.google.inject.Singleton;
 
 import org.bdgenomics.convert.Converter;
-import org.bdgenomics.convert.ConversionStringency;
 
-import org.bdgenomics.formats.avro.Dbxref;
 import org.bdgenomics.formats.avro.Feature;
-import org.bdgenomics.formats.avro.OntologyTerm;
 import org.bdgenomics.formats.avro.Read;
 import org.bdgenomics.formats.avro.Sequence;
 import org.bdgenomics.formats.avro.Strand;
diff --git a/src/main/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrand.java b/src/main/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrand.java
index 81a5324..33fc28b 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrand.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrand.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/ConvertUtils.java b/src/main/java/org/biojava/nbio/adam/convert/ConvertUtils.java
index ffc7755..0148a54 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/ConvertUtils.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/ConvertUtils.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToFeatures.java b/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToFeatures.java
index fd3b119..029b113 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToFeatures.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToFeatures.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToSequence.java b/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToSequence.java
index 116a3ec..e001a2d 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToSequence.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/DnaSequenceToSequence.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/FastqToRead.java b/src/main/java/org/biojava/nbio/adam/convert/FastqToRead.java
index 68ec97c..9a0203c 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/FastqToRead.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/FastqToRead.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -26,7 +26,6 @@
 import javax.annotation.concurrent.Immutable;
 
 import org.bdgenomics.convert.AbstractConverter;
-import org.bdgenomics.convert.Converter;
 import org.bdgenomics.convert.ConversionException;
 import org.bdgenomics.convert.ConversionStringency;
 
@@ -34,7 +33,6 @@
 import org.bdgenomics.formats.avro.Read;
 
 import org.biojava.nbio.genome.io.fastq.Fastq;
-import org.biojava.nbio.genome.io.fastq.FastqVariant;
 
 import org.slf4j.Logger;
 
@@ -68,7 +66,7 @@ public Read convert(final Fastq fastq,
             .setDescription(fastq.getDescription())
             .setAlphabet(Alphabet.DNA)
             .setSequence(fastq.getSequence().toUpperCase())
-            .setLength(Long.valueOf(fastq.getSequence().length()))
+            .setLength((long) fastq.getSequence().length())
             .setQualityScores(fastq.getQuality())
             .build();
     }
diff --git a/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToFeatures.java b/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToFeatures.java
index 092f93d..59f7788 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToFeatures.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToFeatures.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToSequence.java b/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToSequence.java
index 09d9db3..c495bb1 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToSequence.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/ProteinSequenceToSequence.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/ReadToFastq.java b/src/main/java/org/biojava/nbio/adam/convert/ReadToFastq.java
index b2fa54d..dd23a1a 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/ReadToFastq.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/ReadToFastq.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
@@ -26,7 +26,6 @@
 import javax.annotation.concurrent.Immutable;
 
 import org.bdgenomics.convert.AbstractConverter;
-import org.bdgenomics.convert.Converter;
 import org.bdgenomics.convert.ConversionException;
 import org.bdgenomics.convert.ConversionStringency;
 
@@ -72,12 +71,9 @@ public Fastq convert(final Read read,
                 .withVariant(FastqVariant.FASTQ_SANGER)
                 .build();
         }
-        catch (NullPointerException e) {
+        catch (NullPointerException | IllegalArgumentException e) {
             warnOrThrow(read, "could not convert read", e, stringency, logger); 
         }
-        catch (IllegalArgumentException e) {
-            warnOrThrow(read, "could not convert read", e, stringency, logger);
-        }
         return fastq;
     }
 
diff --git a/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToFeatures.java b/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToFeatures.java
index d69de78..b267100 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToFeatures.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToFeatures.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToSequence.java b/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToSequence.java
index ff8a47c..6b870ca 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToSequence.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/RnaSequenceToSequence.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/convert/package-info.java b/src/main/java/org/biojava/nbio/adam/convert/package-info.java
index 6d1c266..db496fb 100644
--- a/src/main/java/org/biojava/nbio/adam/convert/package-info.java
+++ b/src/main/java/org/biojava/nbio/adam/convert/package-info.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/java/org/biojava/nbio/adam/package-info.java b/src/main/java/org/biojava/nbio/adam/package-info.java
index 4ba1534..262bd09 100644
--- a/src/main/java/org/biojava/nbio/adam/package-info.java
+++ b/src/main/java/org/biojava/nbio/adam/package-info.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/scala/org/biojava/nbio/adam/BiojavaAdamContext.scala b/src/main/scala/org/biojava/nbio/adam/BiojavaAdamContext.scala
index 44cbfa3..192029b 100644
--- a/src/main/scala/org/biojava/nbio/adam/BiojavaAdamContext.scala
+++ b/src/main/scala/org/biojava/nbio/adam/BiojavaAdamContext.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/main/scala/org/biojava/nbio/adam/TryWith.scala b/src/main/scala/org/biojava/nbio/adam/TryWith.scala
index 3836c39..6a10bd3 100644
--- a/src/main/scala/org/biojava/nbio/adam/TryWith.scala
+++ b/src/main/scala/org/biojava/nbio/adam/TryWith.scala
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/test/java/org/biojava/nbio/adam/convert/BiojavaModuleTest.java b/src/test/java/org/biojava/nbio/adam/convert/BiojavaModuleTest.java
index 72e5745..1cccadd 100644
--- a/src/test/java/org/biojava/nbio/adam/convert/BiojavaModuleTest.java
+++ b/src/test/java/org/biojava/nbio/adam/convert/BiojavaModuleTest.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/test/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrandTest.java b/src/test/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrandTest.java
index b4f0fcd..f7f612b 100644
--- a/src/test/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrandTest.java
+++ b/src/test/java/org/biojava/nbio/adam/convert/BiojavaStrandToBdgenomicsStrandTest.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/test/java/org/biojava/nbio/adam/convert/FastqToReadTest.java b/src/test/java/org/biojava/nbio/adam/convert/FastqToReadTest.java
index f1cfe54..6db51a0 100644
--- a/src/test/java/org/biojava/nbio/adam/convert/FastqToReadTest.java
+++ b/src/test/java/org/biojava/nbio/adam/convert/FastqToReadTest.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published
diff --git a/src/test/java/org/biojava/nbio/adam/convert/ReadToFastqTest.java b/src/test/java/org/biojava/nbio/adam/convert/ReadToFastqTest.java
index b9f4658..8e61152 100644
--- a/src/test/java/org/biojava/nbio/adam/convert/ReadToFastqTest.java
+++ b/src/test/java/org/biojava/nbio/adam/convert/ReadToFastqTest.java
@@ -1,7 +1,7 @@
 /*
 
     biojava-adam  Biojava and ADAM integration.
-    Copyright (c) 2017-2021 held jointly by the individual authors.
+    Copyright (c) 2017-2022 held jointly by the individual authors.
 
     This library is free software; you can redistribute it and/or modify it
     under the terms of the GNU Lesser General Public License as published