diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..9d8fc46
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,20 @@
+name: CI
+
+on: pull_request
+
+jobs:
+ build:
+ runs-on: ubuntu-latest
+
+ steps:
+ - uses: actions/checkout@v2
+ - uses: actions/setup-java@v2
+ with:
+ java-version: '11'
+ distribution: 'temurin'
+ - uses: actions/cache@v2
+ with:
+ path: ~/.m2
+ key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
+ restore-keys: ${{ runner.os }}-m2
+ - run: mvn --batch-mode --update-snapshots clean package
diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
new file mode 100644
index 0000000..6b95963
--- /dev/null
+++ b/.github/workflows/deploy.yml
@@ -0,0 +1,29 @@
+name: Deploy Snapshot
+
+on:
+ push:
+ branches:
+ - master
+
+jobs:
+ build:
+ runs-on: ubuntu-latest
+ if: ${{ github.repository == 'biojava/biojava-adam' }}
+ steps:
+ - uses: actions/checkout@v2
+ - uses: actions/setup-java@v2
+ with:
+ java-version: '11'
+ distribution: 'temurin'
+ server-id: sonatype-nexus-snapshots
+ server-username: MAVEN_USERNAME
+ server-password: MAVEN_PASSWORD
+ - uses: actions/cache@v2
+ with:
+ path: ~/.m2
+ key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
+ restore-keys: ${{ runner.os }}-m2
+ - env:
+ MAVEN_USERNAME: ${{ secrets.OSS_SONATYPE_USERNAME }}
+ MAVEN_PASSWORD: ${{ secrets.OSS_SONATYPE_PASSWORD }}
+ run: mvn --batch-mode -DskipTests=true deploy
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 2f2ab4f..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1,6 +0,0 @@
-language: java
-jdk:
- - openjdk8
-cache:
- directories:
- - $HOME/.m2
diff --git a/README.md b/README.md
index 12f3cd1..cde25bd 100644
--- a/README.md
+++ b/README.md
@@ -13,8 +13,8 @@ Install
* JDK 1.8 or later, http://openjdk.java.net
* Apache Maven 3.6.3 or later, http://maven.apache.org
- * Apache Spark 3.1.2 or later, http://spark.apache.org
- * ADAM: Genomic Data System 0.36.0 or later, https://github.com/bigdatagenomics/adam
+ * Apache Spark 3.2.0 or later, http://spark.apache.org
+ * ADAM: Genomic Data System 0.37.0 or later, https://github.com/bigdatagenomics/adam
To build
@@ -35,10 +35,10 @@ Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
- /___/ .__/\_,_/_/ /_/\_\ version 3.1.2
+ /___/ .__/\_,_/_/ /_/\_\ version 3.2.0
/_/
-Using Scala version 2.12.10 (Java HotSpot(TM) 64-Bit Server VM, Java 1.8.0_191)
+Using Scala version 2.12.15 (Java HotSpot(TM) 64-Bit Server VM, Java 1.8.0_191)
Type in expressions to have them evaluated.
Type :help for more information.
diff --git a/pom.xml b/pom.xml
index 0a15e70..0559dfb 100644
--- a/pom.xml
+++ b/pom.xml
@@ -33,7 +33,7 @@
biojava-adam
jar
biojava-adam
- 0.8.0
+ 0.9.0
Biojava and ADAM integration.
http://www.biojava.org
2017
@@ -41,7 +41,7 @@
scm:git:git@github.com:biojava/biojava-adam.git
scm:git:git@github.com:biojava/biojava-adam.git
git@github.com:biojava/biojava-adam.git
- biojava-adam-0.8.0
+ biojava-adam-0.9.0
@@ -61,7 +61,7 @@
- 0.36.0
+ 0.37.0
0.12.0
6.0.4
1.8
@@ -69,11 +69,11 @@
[1.8,)
UTF-8
UTF-8
- 4.2.6
- 2.12.10
+ 5.0.1
+ 2.12.15
2.12
1.7.30
- 3.1.2
+ 3.2.0
@@ -344,10 +344,6 @@
com.google.code.findbugs
jsr305
-
- com.google.inject
- guice
-
org.apache.avro
avro