org.sonatype.oss oss-parent 9 4.0.0 org.biojava biojava pom 7.2.1 biojava BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics. https://www.biojava.org BioJava https://www.biojava.org GNU LGPL v2 http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt repo 11 UTF-8 UTF-8 UTF-8 512M 1.0.11 2.0.12 2.23.1 5.10.1 ciftools-java 5.0.1 scm:git:git://github.com/biojava/biojava.git scm:git:git@github.com:biojava/biojava.git https://github.com/biojava/biojava biojava-7.2.1 andreas Andreas Prlic andreas.prlic@gmail.com http://www.spice-3d.org University of California, San Diego http://www.rcsb.org project lead architect developer -9 http://tinyurl.com/mymsfga lafita Aleix Lafita aalhossary Amr ALHOSSARY Andreas Dräger Andy Yates Anthony Bradley Carmelo Foti Chuan Hock Koh Douglas Myers-Turnbull Gediminas Rimsa George Waldon Hannes Brandstätter-Müller Elinow Jianjiong Gao Jonathan Warren Jose Manuel Duarte Jules Jacobsen Karl Nicholas Mark Chapman Michael Heuer paolopavan Paolo Pavan Peter Rose Peter Troshin Richard Holland Robert Thornton Scooter Willis JonStargaryen Sebastian Bittrich Spencer Bliven Sylvain Foisy maven-clean-plugin 3.4.0 maven-compiler-plugin 3.13.0 ${jdk.version} ${jdk.version} maven-dependency-plugin 3.8.1 maven-jar-plugin 3.4.2 maven-scm-plugin 2.1.0 maven-source-plugin 3.3.1 maven-failsafe-plugin 3.0.0-M5 net.sf stat-scm 1.2.0 org.jvnet.jaxb2.maven2 maven-jaxb2-plugin 0.14.0 org.apache.maven.plugins maven-release-plugin 3.1.1 true clean install true forked-path org.apache.maven.plugins maven-javadoc-plugin 3.11.2 -Xdoclint:none --allow-script-in-comments 256m org.apache.maven.plugins maven-surefire-plugin 3.5.2 org.apache.maven.plugins maven-shade-plugin 3.2.4 org.apache.maven.plugins maven-project-info-reports-plugin 3.8.0 maven-assembly-plugin 3.7.1 src/main/assembly/assembly.xml assemble package single org.codehaus.mojo buildnumber-maven-plugin 1.4 org.apache.maven.plugins maven-checkstyle-plugin 3.1.1 org.apache.maven.plugins maven-resources-plugin 3.2.0 org.apache.maven.plugins maven-enforcer-plugin 3.5.0 enforce-java enforce ${jdk.version} org.apache.maven.plugins maven-install-plugin 3.1.3 org.apache.maven.plugins maven-javadoc-plugin 3.11.2 org.apache.maven.plugins maven-site-plugin 3.21.0 org.apache.maven.plugins maven-deploy-plugin 3.1.3 org.apache.maven.plugins maven-surefire-plugin -Xmx1500M false 1 org.apache.maven.plugins maven-jar-plugin true true true all-permissions * BioJava org.apache.maven.plugins maven-checkstyle-plugin false org.apache.maven.plugins maven-enforcer-plugin 3.5.0 org.apache.maven.wagon wagon-ssh 2.6 junit junit 4.13.2 test org.junit.vintage junit-vintage-engine ${junit-jupiter.version} test org.junit.jupiter junit-jupiter-engine ${junit-jupiter.version} test org.junit.jupiter junit-jupiter-params ${junit-jupiter.version} test org.slf4j slf4j-api ${slf4j.version} org.apache.logging.log4j log4j-slf4j2-impl ${log4j.version} runtime org.apache.logging.log4j log4j-api ${log4j.version} runtime org.apache.logging.log4j log4j-core ${log4j.version} runtime org.biojava.thirdparty forester 1.039 jakarta.xml.bind jakarta.xml.bind-api 4.0.0 org.glassfish.jaxb jaxb-runtime 4.0.3 runtime com.google.guava guava 33.4.0-jre maven-javadoc-plugin aggregate aggregate javadoc:aggregate true true ${jdk.version} false true org.apache.maven.plugins maven-project-info-reports-plugin index summary modules scm dependency-management dependencies dependency-convergence distribution-management org.apache.maven.plugins maven-checkstyle-plugin 2.17 org.apache.maven.plugins maven-jxr-plugin 2.5 ossrh https://oss.sonatype.org/content/repositories/snapshots ossrh https://oss.sonatype.org/service/local/staging/deploy/maven2/ biojava.org The biojava.org site https://biojava.org/docs/site release org.sonatype.plugins nexus-staging-maven-plugin 1.6.13 true ossrh https://oss.sonatype.org/ true org.apache.maven.plugins maven-gpg-plugin 1.6 sign-artifacts verify sign --pinentry-mode loopback org.apache.maven.plugins maven-source-plugin 3.3.1 attach-sources jar-no-fork org.apache.maven.plugins maven-javadoc-plugin 3.11.2 attach-javadocs jar org.apache.maven.plugins maven-enforcer-plugin 3.5.0 org.apache.maven.plugins maven-site-plugin 3.21.0 true codesigning false org.apache.maven.plugins maven-jarsigner-plugin 1.4 sign sign true true ${keystore.type} ${keystore.path} ${keystore.alias} ${keystore.store.password} ${keystore.key.password} ${project.build.directory}/${project.build.finalName}.jar true true sign -tsa https://timestamp.geotrust.com/tsa biojava-core biojava-alignment biojava-structure biojava-structure-gui biojava-genome biojava-modfinder biojava-ws biojava-protein-disorder biojava-aa-prop biojava-survival biojava-ontology biojava-protein-comparison-tool biojava-integrationtest 2000 Github https://github.com/biojava/biojava/issues