From b21a2838635f292d7ca44cc28702e57e812ef4ba Mon Sep 17 00:00:00 2001 From: Peter Rose Date: Thu, 6 Jul 2017 10:21:46 -0700 Subject: [PATCH 1/2] Removed misleading comment --- .../org/biojava/nbio/structure/io/mmcif/SimpleMMcifConsumer.java | 1 - 1 file changed, 1 deletion(-) diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/SimpleMMcifConsumer.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/SimpleMMcifConsumer.java index a421abcf94..32b821ded2 100644 --- a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/SimpleMMcifConsumer.java +++ b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/SimpleMMcifConsumer.java @@ -1467,7 +1467,6 @@ public void newPdbxDatabaseStatus(PdbxDatabaseStatus status) { header = new PDBHeader(); } - // first entry in revision history is the release date try { Date depositionDate = dateFormat.parse(status.getRecvd_initial_deposition_date()); header.setDepDate(depositionDate); From f35d972b775ffdbea539d2111192a10701d28131 Mon Sep 17 00:00:00 2001 From: Peter Rose Date: Thu, 6 Jul 2017 11:58:59 -0700 Subject: [PATCH 2/2] Populate release date instead of modification date. --- .../nbio/structure/io/mmtf/MmtfStructureReader.java | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmtf/MmtfStructureReader.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmtf/MmtfStructureReader.java index 961a5a483f..fa5a15bc78 100644 --- a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmtf/MmtfStructureReader.java +++ b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmtf/MmtfStructureReader.java @@ -506,14 +506,13 @@ public void setHeaderInfo(float rFree, float rWork, float resolution, String tit if(releaseDate!=null){ try { Date relDate = formatter.parse(releaseDate); - pdbHeader.setModDate(relDate); + pdbHeader.setRelDate(relDate); } catch (ParseException e) { - logger.warn("Could not parse date string '{}', release/modification date will be unavailable", releaseDate); + logger.warn("Could not parse date string '{}', release date will be unavailable", releaseDate); } } else{ - pdbHeader.setModDate(new Date(0)); + pdbHeader.setRelDate(new Date(0)); } - } }