refactor code to java 8 streams

balaji-s · balaji-s · commit 9a59362a2192 · 2020-06-13T22:35:06.000+05:30
diff --git a/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/Utils.java b/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/Utils.java
@@ -89,7 +89,7 @@ public final static boolean doesSequenceContainInvalidChar(String sequence, Set<
 	 */
 	public final static int getNumberOfInvalidChar(String sequence,  Set<Character> cSet, boolean ignoreCase){
 		char[] cArray = ignoreCase ? sequence.toUpperCase().toCharArray(): sequence.toCharArray();
-		final Set<Character> characterSet = cSet == null ? cSet : PeptideProperties.standardAASet;
+		final Set<Character> characterSet = cSet == null ?PeptideProperties.standardAASet: cSet ; 
 		int total = (int)CharBuffer.wrap(cArray).chars().filter(character -> !characterSet.contains((char)character)).count();
 		return total;
 	}

Original file line number	Diff line number	Diff line change
`@@ -89,7 +89,7 @@ public final static boolean doesSequenceContainInvalidChar(String sequence, Set<`
`89`	`89`	`*/`
`90`	`90`	`public final static int getNumberOfInvalidChar(String sequence, Set<Character> cSet, boolean ignoreCase){`
`91`	`91`	`char[] cArray = ignoreCase ? sequence.toUpperCase().toCharArray(): sequence.toCharArray();`
`92`		`- final Set<Character> characterSet = cSet == null ? cSet : PeptideProperties.standardAASet;`
	`92`	`+ final Set<Character> characterSet = cSet == null ?PeptideProperties.standardAASet: cSet ;`
`93`	`93`	`int total = (int)CharBuffer.wrap(cArray).chars().filter(character -> !characterSet.contains((char)character)).count();`
`94`	`94`	`return total;`
`95`	`95`	`}`