setting timeout when talking to Hmmer server

andreasprlic · andreasprlic · commit 70b00cbbe429 · 2015-08-28T11:04:41.000-07:00
diff --git a/biojava-ws/src/main/java/org/biojava/nbio/ws/hmmer/RemoteHmmerScan.java b/biojava-ws/src/main/java/org/biojava/nbio/ws/hmmer/RemoteHmmerScan.java
@@ -112,7 +112,7 @@ public SortedSet<HmmerResult> scan(ProteinSequence sequence, URL serviceLocation
 		HttpURLConnection connection2 = (HttpURLConnection) respUrl.openConnection();
 		connection2.setRequestMethod("GET");
 		connection2.setRequestProperty("Accept", "application/json");
-
+		connection2.setConnectTimeout(60000); // 1 minute
 
 		//Get the response 
 		BufferedReader in = new BufferedReader(
