Unifying the way ALHOSSARY is written across different platform

aalhossary · aalhossary · commit 5f7bb3fda62c · 2021-10-21T15:53:07.000+08:00
diff --git a/CITATION.cff b/CITATION.cff
@@ -19,7 +19,7 @@ authors:
     given-names: Andreas
   - family-names: Lafita
     given-names: Aleix
-  - family-names: Al-Hossary
+  - family-names: ALHOSSARY
     given-names: Amr
   - family-names: Dräger
     given-names: Andreas
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmConsensusAnnotation.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmConsensusAnnotation.java
@@ -27,7 +27,7 @@
  * Stores all the content parsed from the #=GC lines
  *
  * @since 3.0.5
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Marko Vaz
  *
  */
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileAnnotation.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileAnnotation.java
@@ -32,7 +32,7 @@
  *
  *
  * @since 3.0.5
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Marko Vaz
  *
  */
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileParser.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileParser.java
@@ -88,7 +88,7 @@
  * </pre>
  *
  * @since 3.0.5
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Marko Vaz
  *
  */
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmResidueAnnotation.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmResidueAnnotation.java
@@ -27,7 +27,7 @@
  * Stores all the content parsed from the #=GR lines
  *
  * @since 3.0.5
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Marko Vaz
  *
  */
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmSequenceAnnotation.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmSequenceAnnotation.java
@@ -32,7 +32,7 @@
  * Stores all the content parsed from the #=GS lines
  *
  * @since 3.0.5
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Marko Vaz
  *
  */
diff --git a/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmStructure.java b/biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmStructure.java
@@ -75,7 +75,7 @@
  * </table>
  *
  * @since 3.0.5
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Marko Vaz
  *
  */
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaReader.java b/biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaReader.java
@@ -124,7 +124,7 @@ public LinkedHashMap<String,S> process() throws IOException {
 	 * <li>remember to close the underlying resource when you are done.</li>
 	 * </ul>
 	 * @see #process()
-	 * @author Amr AL-Hossary
+	 * @author Amr ALHOSSARY
 	 * @since 3.0.6
 	 * @param max maximum number of records to return, <code>-1</code> for infinity.
 	 * @return {@link HashMap} containing maximum <code>max</code> parsed fasta records
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/GenbankReader.java b/biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/GenbankReader.java
@@ -138,7 +138,7 @@ public LinkedHashMap<String,S> process() throws IOException, CompoundNotFoundExc
 	 * <li>remember to close the underlying resource when you are done.</li>
 	 * </ul>
 	 * @see #process()
-	 * @author Amr AL-Hossary
+	 * @author Amr ALHOSSARY
 	 * @since 3.0.6
 	 * @param max maximum number of records to return.
 	 * @return {@link HashMap} containing maximum <code>max</code> parsed Genbank records
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/PlainFastaHeaderParser.java b/biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/PlainFastaHeaderParser.java
@@ -33,7 +33,7 @@
  * over the data then they can create their own implementation of a
  * FastaHeaderParserInterface
  *
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @since 3.0.6
  */
 public class PlainFastaHeaderParser<S extends AbstractSequence<C>, C extends Compound>
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/util/StringManipulationHelper.java b/biojava-core/src/main/java/org/biojava/nbio/core/util/StringManipulationHelper.java
@@ -18,7 +18,7 @@
  *      http://www.biojava.org/
  *
  * Created on Sep 14, 2011
- * Author: Amr AL-Hossary, Richard Adams
+ * Author: Amr ALHOSSARY, Richard Adams
  *
  */
 package org.biojava.nbio.core.util;
@@ -49,7 +49,7 @@
  * A utility class for common {@link String} manipulation tasks.
  * All functions are static methods.
  *
- * @author Amr AL-Hossary
+ * @author Amr ALHOSSARY
  * @author Richard Adams
  */
 public class StringManipulationHelper  {
diff --git a/pom.xml b/pom.xml
@@ -81,7 +81,8 @@
 			<name>Aleix Lafita</name>
 		</developer>
 		<developer>
-			<name>Amr AL-HOSSARY</name>
+			<id>aalhossary</id>
+			<name>Amr ALHOSSARY</name>
 		</developer>
 		<developer>
 			<name>Andreas Dräger</name>

Original file line number	Diff line number	Diff line change
`@@ -27,7 +27,7 @@`
`27`	`27`	`* Stores all the content parsed from the #=GC lines`
`28`	`28`	`*`
`29`	`29`	`* @since 3.0.5`
`30`		`- * @author Amr AL-Hossary`
	`30`	`+ * @author Amr ALHOSSARY`
`31`	`31`	`* @author Marko Vaz`
`32`	`32`	`*`
`33`	`33`	`*/`
Original file line number	Diff line number	Diff line change
`@@ -32,7 +32,7 @@`
`32`	`32`	`*`
`33`	`33`	`*`
`34`	`34`	`* @since 3.0.5`
`35`		`- * @author Amr AL-Hossary`
	`35`	`+ * @author Amr ALHOSSARY`
`36`	`36`	`* @author Marko Vaz`
`37`	`37`	`*`
`38`	`38`	`*/`
Original file line number	Diff line number	Diff line change
`@@ -88,7 +88,7 @@`
`88`	`88`	`* </pre>`
`89`	`89`	`*`
`90`	`90`	`* @since 3.0.5`
`91`		`- * @author Amr AL-Hossary`
	`91`	`+ * @author Amr ALHOSSARY`
`92`	`92`	`* @author Marko Vaz`
`93`	`93`	`*`
`94`	`94`	`*/`
Original file line number	Diff line number	Diff line change
`@@ -75,7 +75,7 @@`
`75`	`75`	`* </table>`
`76`	`76`	`*`
`77`	`77`	`* @since 3.0.5`
`78`		`- * @author Amr AL-Hossary`
	`78`	`+ * @author Amr ALHOSSARY`
`79`	`79`	`* @author Marko Vaz`
`80`	`80`	`*`
`81`	`81`	`*/`
Original file line number	Diff line number	Diff line change
`@@ -33,7 +33,7 @@`
`33`	`33`	`* over the data then they can create their own implementation of a`
`34`	`34`	`* FastaHeaderParserInterface`
`35`	`35`	`*`
`36`		`- * @author Amr AL-Hossary`
	`36`	`+ * @author Amr ALHOSSARY`
`37`	`37`	`* @since 3.0.6`
`38`	`38`	`*/`
`39`	`39`	`public class PlainFastaHeaderParser<S extends AbstractSequence<C>, C extends Compound>`