Logging

josemduarte · josemduarte · commit 58136fe36f4c · 2025-02-28T13:13:47.000-08:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java
@@ -1171,7 +1171,7 @@ public void finish() {
                 currentModel.add(currentChain);
             }
         } else if (!params.isHeaderOnly()) {
-            logger.warn("current chain is null at end of document.");
+            logger.warn("No chains were instantiated after parsing the whole CIF document. This could be due to the atom_site category being absent");
         }
 
         allModels.add(currentModel);

Original file line number	Diff line number	Diff line change
`@@ -1171,7 +1171,7 @@ public void finish() {`
`1171`	`1171`	`currentModel.add(currentChain);`
`1172`	`1172`	`}`
`1173`	`1173`	`} else if (!params.isHeaderOnly()) {`
`1174`		`- logger.warn("current chain is null at end of document.");`
	`1174`	`+ logger.warn("No chains were instantiated after parsing the whole CIF document. This could be due to the atom_site category being absent");`
`1175`	`1175`	`}`
`1176`	`1176`
`1177`	`1177`	`allModels.add(currentModel);`