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lee-mcfaul2lee-mcfaul2
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+7
-12
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9 files changed

+7
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‎biojava-core/src/test/java/org/biojava/nbio/core/sequence/loader/GenbankProxySequenceReaderTest.java‎

Lines changed: 7 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -40,6 +40,8 @@
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import java.io.FileOutputStream;
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import java.io.IOException;
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import java.io.InputStream;
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import java.nio.channels.Channels;
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import java.nio.channels.ReadableByteChannel;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Collection;
@@ -104,25 +106,18 @@ private void copyTestFileToWorkingDirectory(String filename) throws IOException
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}
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String dest = destRoot + filename;
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String src = "org/biojava/nbio/core/sequence/GenbankProxySequenceReader/" + filename;
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String src = "org/biojava/nbio/core/sequence/loader/" + filename;
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//Remove any pre-existing files
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File d = new File(dest);
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d.delete();
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FileOutputStream destination = new FileOutputStream(new File(dest));
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InputStream source = this.getClass().getClassLoader().getResourceAsStream(src);
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try(FileOutputStream destination = new FileOutputStream(d);
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InputStream is = this.getClass().getClassLoader().getResourceAsStream(src);
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ReadableByteChannel source = Channels.newChannel(is)) {
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int read;
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byte[] buffer = new byte[1024];
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while((read = source.read(buffer)) > 0){
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destination.write(buffer, 0, read);
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destination.getChannel().transferFrom(source, 0, Long.MAX_VALUE);
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}
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destination.flush();
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destination.close();
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source.close();
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}
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biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/152970917.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/152970917.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/254839678.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/254839678.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/379015144.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/379015144.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/381353147.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/381353147.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/381353148.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/381353148.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/381353149.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/381353149.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/399235158.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/399235158.gb

File renamed without changes.

biojava-core/src/test/resources/org/biojava/nbio/core/sequence/GenbankProxySequenceReader/7525057.gb renamed to biojava-core/src/test/resources/org/biojava/nbio/core/sequence/loader/7525057.gb

File renamed without changes.

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