Skip to content

Commit 40edc5c

Browse files
committed
Add lectins as example of CECP multiple alignment
1 parent 6842276 commit 40edc5c

File tree

1 file changed

+4
-2
lines changed

1 file changed

+4
-2
lines changed

biojava-structure-gui/src/main/java/demo/DemoMultipleMC.java

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -53,9 +53,9 @@ public static void main(String[] args) throws IOException, StructureException, I
5353
//Protein Kinases (CEMC paper)
5454
//List<String> names = Arrays.asList("1cdk.A", "1cja.A", "1csn", "1b6c.B", "1ir3.A", "1fgk.A", "1byg.A", "1hck", "1blx.A", "3erk", "1bmk.A", "1kob.A", "1tki.A", "1phk", "1a06");
5555
//DHFR (Gerstein 1998 paper)
56-
//List<String> names = Arrays.asList("d1dhfa_", "8dfr", "d4dfra_", "3dfr");
56+
List<String> names = Arrays.asList("d1dhfa_", "8dfr", "d4dfra_", "3dfr");
5757
//Beta-propeller (MATT paper)
58-
List<String> names = Arrays.asList("d1nr0a1", "d1nr0a2", "d1p22a2", "d1tbga_");
58+
//List<String> names = Arrays.asList("d1nr0a1", "d1nr0a2", "d1p22a2", "d1tbga_");
5959
//Beta-helix (MATT paper)
6060
//List<String> names = Arrays.asList("d1hm9a1", "d1kk6a_", "d1krra_", "d1lxaa_", "d1ocxa_", "d1qrea_", "d1xata_", "d3tdta_");
6161
//TIM barrels (MUSTA paper)
@@ -76,6 +76,8 @@ public static void main(String[] args) throws IOException, StructureException, I
7676
//List<String> names = Arrays.asList("d1heta2", "d1ek6a_", "d1obfo1", "2cmd", "d1np3a2", "d1bgva1", "d1id1a_", "d1id1a_", "d1oi7a1");
7777
//Circular Permutations (Bliven CECP paper) - dynamin GTP-ase with CP G-domain
7878
//List<String> names = Arrays.asList("d1u0la2", "d1jwyb_");
79+
//Circular Permutations (Bliven CECP paper) - Legume lectins
80+
//List<String> names = Arrays.asList("2pel.A", "2eig.A", "1uzy.A", "1lec.A", "3cna.A", "4i30.A", "4z8b.A", "2d3p.A");
7981
//Circular Permutations: SAND and MFPT domains
8082
//List<String> names = Arrays.asList("d2bjqa1", "d1h5pa_", "d1ufna_"); //"d1oqja"
8183
//Flexible domain family of proteins (FatCat paper?)

0 commit comments

Comments
 (0)