Add CITATION.cff

sbliven · sbliven · commit 3c9f1e7962c3 · 2019-08-20T16:22:27.000+02:00
This is a hand-coded CFF file for BioJava 5.2.1
diff --git a/CITATION.cff b/CITATION.cff
@@ -0,0 +1,195 @@
+cff-version: 1.0.3
+message: If you use BioJava, please cite the software and the most recent paper reference (Lafita 2019).
+title: BioJava
+version: 5.2.1
+date-released: 2019-02-05
+doi: 10.5281/zenodo.2557853
+commit: 783065396f92f14c3fb6e2b9a684a17aa46bb974
+url: http://www.biojava.org
+repository-code: https://github.com/biojava/biojava/
+license: LGPL-2.1-only
+abstract: >-
+    BioJava is an open-source project dedicated to providing a Java framework for processing biological
+    data. It provides analytical and statistical routines, parsers for common file formats and allows the
+    manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application
+    development for bioinformatics.
+
+authors:
+  - family-names: Prlić
+    given-names: Andreas
+  - family-names: Lafita
+    given-names: Aleix
+  - family-names: Al-Hossary
+    given-names: Amr
+  - family-names: Dräger
+    given-names: Andreas
+  - family-names: Yates
+    given-names: Andy
+  - family-names: Bradley
+    given-names: Anthony
+  - family-names: Foti
+    given-names: Carmelo
+  - family-names: Koh
+    given-names: Chuan Hock
+  - family-names: Myers-Turnbull
+    given-names: Douglas
+  - family-names: Rimsa
+    given-names: Gediminas
+  - family-names: Waldon
+    given-names: George
+  - family-names: Brandstätter-Müller
+    given-names: Hannes
+  - name: Elinow
+  - family-names: Gao
+    given-names: Jianjiong
+  - family-names: Warren
+    given-names: Jonathan
+  - family-names: Duarte
+    given-names: Jose Manuel
+  - family-names: Jacobsen
+    given-names: Jules
+  - family-names: Nicholas
+    given-names: Karl
+  - family-names: Chapman
+    given-names: Mark
+  - family-names: Heuer
+    given-names: Michael
+  - family-names: Rose
+    given-names: Peter
+  - family-names: Troshin
+    given-names: Peter
+  - family-names: Holland
+    given-names: Richard
+  - family-names: Thornton
+    given-names: Robert
+  - family-names: Willis
+    given-names: Scooter
+  - family-names: Bliven
+    given-names: Spencer
+  - family-names: Foisy
+    given-names: Sylvain
+
+references:
+  - type: article
+    authors:
+      - family-names: Lafita
+        given-names: Aleix
+        orcid: http://orcid.org/0000-0003-1549-3162
+      - family-names: Bliven
+        given-names: Spencer E
+        orcid: http://orcid.org/0000-0002-1200-1698
+      - family-names: Prlić
+        given-names: Andreas
+        orcid: https://orcid.org/0000-0001-6346-6391
+      - family-names: Guzenko
+        given-names: Dmytro
+        orcid: https://orcid.org/0000-0002-8688-7460
+      - family-names: Rose
+        given-names: Peter W
+        orcid: http://orcid.org/0000-0001-9981-9750
+      - family-names: Bradley
+        given-names: Anthony
+        orcid: http://orcid.org/0000-0002-0881-3490
+      - family-names: Pavan
+        given-names: Paolo
+      - family-names: Myers-Turnbull
+        given-names: Douglas
+        orcid: http://orcid.org/0000-0003-3610-4808
+      - family-names: Valasatava
+        given-names: Yana
+        orcid: http://orcid.org/0000-0003-1018-5718
+      - family-names: Heuer
+        given-names: Michael
+        orcid: http://orcid.org/0000-0002-9052-6000
+      - family-names: Larson
+        given-names: Matt
+        orcid: http://orcid.org/0000-0003-2116-5747
+      - family-names: Burley
+        given-names: Stephen K
+      - family-names: Duarte
+        given-names: Jose M
+        orcid: http://orcid.org/0000-0002-9544-5621
+    title: "BioJava 5: A community driven open-source bioinformatics library"
+    year: 2019
+    journal: PLOS Computational Biology
+    volume: 15
+    number: "2"
+    section: e1006791
+    doi: 10.1371/journal.pcbi.1006791
+    url: http://dx.plos.org/10.1371/journal.pcbi.1006791
+
+  - type: article
+    authors:
+      - family-names: Prlić
+        given-names: Andreas
+      - family-names: Yates
+        given-names: Andrew
+      - family-names: Bliven
+        given-names: Spencer E
+      - family-names: Rose
+        given-names: Peter W
+      - family-names: Jacobsen
+        given-names: Julius
+      - family-names: Troshin
+        given-names: Peter V
+      - family-names: Chapman
+        given-names: Mark
+      - family-names: Gao
+        given-names: Jianjiong
+      - family-names: Koh
+        given-names: Chuan Hock
+      - family-names: Foisy
+        given-names: Sylvain
+      - family-names: Holland
+        given-names: Richard
+      - family-names: Rimša
+        given-names: Gediminas
+      - family-names: Heuer
+        given-names: Michael L
+      - family-names: Brandstätter-Müller
+        given-names: H
+      - family-names: Bourne
+        given-names: Philip E
+      - family-names: Willis
+        given-names: Scooter
+    title: "BioJava: an open-source framework for bioinformatics in 2012"
+    journal: Bioinformatics
+    year: 2012
+    volume: 28
+    number: "20"
+    section: 2693-2695
+    doi: 10.1093/bioinformatics/bts494
+
+  - type: article
+    authors:
+      - family-names: Holland
+        given-names: R C G
+      - family-names: Down
+        given-names: T A
+      - family-names: Pocock
+        given-names: M
+      - family-names: Prlić
+        given-names: A
+      - family-names: Huen
+        given-names: D
+      - family-names: James
+        given-names: K
+      - family-names: Foisy
+        given-names: S
+      - family-names: Dräger
+        given-names: A
+      - family-names: Yates
+        given-names: A
+      - family-names: Heuer
+        given-names: M
+      - family-names: Schreiber
+        given-names: M J
+    title: "BioJava: an open-source framework for bioinformatics"
+    journal: Bioinformatics
+    year: 2008
+    volume: 24
+    number: "18"
+    section: 2096-2097
+    doi: 10.1093/bioinformatics/btn397
+
+
