biojava
diff --git a/‎CHANGELOG.md‎
Lines changed: 3 additions & 0 deletions b/‎CHANGELOG.md‎
Lines changed: 3 additions & 0 deletions
diff --git a/‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/symmetry/TestQuatSymmetryDetectorExamples.java‎
Lines changed: 2 additions & 2 deletions b/‎biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/symmetry/TestQuatSymmetryDetectorExamples.java‎
Lines changed: 2 additions & 2 deletions
diff --git a/‎biojava-structure/src/main/java/demo/DemoLoadSecStruc.java‎
Lines changed: 0 additions & 8 deletions b/‎biojava-structure/src/main/java/demo/DemoLoadSecStruc.java‎
Lines changed: 0 additions & 8 deletions
@@ -12,6 +12,9 @@ BioJava 6.0.0 (future release)
 * The whole `org.biojava.nbio.structure.rcsb` package, a client for the legacy RCSB PDB APIs (disappearing in Nov 2020)
 * The whole `org.biojava.nbio.structure.validation` package
 * The `org.biojava.nbio.structure.domain.PDBDomainProvider` class to pull domain definitions from legacy RCSB PDB APIs
+* Support for automatically fetching dssp files from RCSB (`org.biojava.nbio.structure.secstruc.DSSPParser.fetch()`)
+* `org.biojava.nbio.structure.PDBStatus`: simplified `Status` enum to 3 states, with OBSOLETE now called REMOVED
+* `org.biojava.nbio.structure.PDBStatus`: removed `getReplacement` and `getReplaces` 
 
 BioJava 5.4.0
 =============
 
@@ -241,7 +241,7 @@ public void testLocal() throws IOException, StructureException {
 		testIds.add("BIO:3JC9:1");
 			testStoichiometries.add("A12B12C12D12E12F12G5H2");
 			localSymmetries = new HashMap<>();
-				localSymmetries.put("A12C12D12E12F12H2","C2");
+				localSymmetries.put("A12B12C12D12E12H2","C2");
 				localSymmetries.put("A12B12C12D12E12F12","C12");
 				localSymmetries.put("G5","H");
 			testLocalSymmetries.add(localSymmetries);
@@ -269,7 +269,7 @@ public void testLocal() throws IOException, StructureException {
 			for (QuatSymmetryResults local:foundLocal) {
 				logger.info("Found stoichiometry "+local.getStoichiometry().toString()+" with symmetry "+local.getSymmetry());
 				assertTrue("Stoichiometry "+local.getStoichiometry().toString()+" not expected for "+testIds.get(iTest),
-						refLocal.keySet().contains(local.getStoichiometry().toString()));
+						refLocal.containsKey(local.getStoichiometry().toString()));
 
 				assertEquals("Symmetry "+local.getSymmetry()+" with stoichiometry "+local.getStoichiometry().toString()+
 								" not expected for "+testIds.get(iTest),
 
@@ -28,7 +28,6 @@
 import org.biojava.nbio.structure.StructureFiletype;
 import org.biojava.nbio.structure.align.util.AtomCache;
 import org.biojava.nbio.structure.io.FileParsingParameters;
-import org.biojava.nbio.structure.secstruc.DSSPParser;
 import org.biojava.nbio.structure.secstruc.SecStrucCalc;
 import org.biojava.nbio.structure.secstruc.SecStrucInfo;
 import org.biojava.nbio.structure.secstruc.SecStrucTools;
@@ -65,13 +64,6 @@ public static void main(String[] args) throws IOException,
 		System.out.println("Author's assignment: ");
 		printSecStruc(s);
 
-		// If the more detailed DSSP prediction is required call this
-		DSSPParser.fetch(pdbID, s, true);
-
-		// Print the assignment residue by residue
-		System.out.println("DSSP assignment: ");
-		printSecStruc(s);
-
 		// finally use BioJava's built in DSSP-like secondary structure assigner
 		SecStrucCalc secStrucCalc = new SecStrucCalc();