Patched to allow tests to be completed on windows. It was due to the test resource included that was built on linux and was not binary comparable to the one obtained at runtime in windows.

pavanpa · pavanpa · commit 905a870c3fc3 · 2015-07-15T14:49:53.000+02:00
diff --git a/biojava-genome/src/test/java/org/biojava/nbio/genome/GeneFeatureHelperTest.java b/biojava-genome/src/test/java/org/biojava/nbio/genome/GeneFeatureHelperTest.java
@@ -102,7 +102,7 @@ public void testOutputFastaSequenceLengthGFF3() throws Exception {
         File gffFile = File.createTempFile("volvox_length", "gff3");
         gffFile.deleteOnExit();
         GeneFeatureHelper.outputFastaSequenceLengthGFF3(fastaSequenceFile, gffFile);
-        FileAssert.assertBinaryEquals("volvox_length.gff3 and volvox_length_output.gff3 are not equal", gffFile,
+        FileAssert.assertEquals("volvox_length.gff3 and volvox_length_output.gff3 are not equal", gffFile,
                 new File("src/test/resources/volvox_length_reference.gff3"));
 
     }

Original file line number	Diff line number	Diff line change
`@@ -102,7 +102,7 @@ public void testOutputFastaSequenceLengthGFF3() throws Exception {`
`102`	`102`	`File gffFile = File.createTempFile("volvox_length", "gff3");`
`103`	`103`	`gffFile.deleteOnExit();`
`104`	`104`	`GeneFeatureHelper.outputFastaSequenceLengthGFF3(fastaSequenceFile, gffFile);`
`105`		`- FileAssert.assertBinaryEquals("volvox_length.gff3 and volvox_length_output.gff3 are not equal", gffFile,`
	`105`	`+ FileAssert.assertEquals("volvox_length.gff3 and volvox_length_output.gff3 are not equal", gffFile,`
`106`	`106`	`new File("src/test/resources/volvox_length_reference.gff3"));`
`107`	`107`
`108`	`108`	`}`