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__init__.py
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374 lines (328 loc) · 9.72 KB
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import os
import platform
from typing import Callable, Any, Dict, Optional
try:
from tqdm import tqdm as progress_bar
except ImportError:
def progress_bar(iterable, *args, **kwargs):
return iterable
import numpy
import deeplake
from ._deeplake import *
from deeplake.ingestion import from_coco
__version__ = "4.5.0"
__all__ = [
"__version__",
"AgreementError",
"AgreementNotAcceptedError",
"Array",
"AuthenticationError",
"AuthorizationError",
"BadRequestError",
"Branch",
"BranchExistsError",
"BranchNotFoundError",
"BranchView",
"Branches",
"BranchesView",
"BytePositionIndexOutOfChunk",
"CanNotCreateTensorWithProvidedCompressions",
"CannotDeleteMainBranchError",
"CannotRenameMainBranchError",
"Client",
"Column",
"ColumnAlreadyExistsError",
"ColumnDefinition",
"ColumnDefinitionView",
"ColumnDoesNotExistError",
"ColumnMissingAppendValueError",
"ColumnStatistics",
"ColumnView",
"CredsKeyAlreadyAssignedError",
"Dataset",
"DatasetUnavailableError",
"DatasetView",
"DimensionsMismatch",
"DimensionsMismatchError",
"DtypeMismatch",
"EmbeddingSizeMismatch",
"EmptyColumnNameError",
"Executor",
"ExplainQueryResult",
"ExpiredTokenError",
"FormatNotSupportedError",
"Future",
"FutureVoid",
"GcsStorageProviderFailed",
"HTTPBodyIsMissingError",
"HTTPBodyIsNotJSONError",
"HTTPRequestFailedError",
"History",
"IncorrectDeeplakePathError",
"IndexAlreadyExistsError",
"IndexBuildConfig",
"IndexingMode",
"InvalidBinaryMaskCompression",
"InvalidChunkStrategyType",
"InvalidColumnValueError",
"InvalidCredsKeyAssignmentError",
"InvalidImageCompression",
"InvalidTextCompression",
"InvalidIndexCreationError",
"InvalidLinkDataError",
"InvalidLinkType",
"InvalidMedicalCompression",
"InvalidPolygonShapeError",
"InvalidSegmentMaskCompression",
"InvalidSequenceOfSequence",
"InvalidTextType",
"InvalidType",
"InvalidTypeAndFormatPair",
"InvalidTypeDimensions",
"InvalidURIError",
"JSONIndexNotFound",
"JSONKeyNotFound",
"LogExistsError",
"LogNotexistsError",
"Metadata",
"NotFoundError",
"NotLoggedInAgreementError",
"PermissionDeniedError",
"PushError",
"QuantizationType",
"Random",
"random",
"ReadOnlyDataset",
"ReadOnlyDatasetModificationError",
"ReadOnlyMetadata",
"Row",
"RowRange",
"RowRangeView",
"RowView",
"Schema",
"SchemaView",
"SearchConfig",
"ShapeIndexOutOfChunk",
"StorageAccessDenied",
"StorageInternalError",
"StorageKeyAlreadyExists",
"StorageKeyNotFound",
"StorageNetworkConnectionError",
"StorageProviderMissingError",
"Tag",
"TagExistsError",
"TagNotFoundError",
"TagView",
"Tags",
"TagsView",
"TensorAlreadyExists",
"UnevenColumnsError",
"UnevenUpdateError",
"UnexpectedInputDataForDicomColumn",
"UnexpectedMedicalTypeInputData",
"UnknownBoundingBoxCoordinateFormat",
"UnknownBoundingBoxPixelFormat",
"UnknownFormat",
"UnknownStringType",
"UnknownType",
"UnspecifiedDtype",
"UnsupportedChunkCompression",
"UnsupportedPythonType",
"UnsupportedSampleCompression",
"Version",
"VersionNotFoundError",
"WriteFailedError",
"WrongChunkCompression",
"WrongSampleCompression",
"__prepare_atfork",
"client",
"connect",
"convert",
"copy",
"core",
"create",
"create_async",
"_create_global_cache",
"delete",
"delete_async",
"disconnect",
"exists",
"exists_async",
"explain_query",
"from_coco",
"from_csv",
"from_parquet",
"like",
"link",
"link_async",
"open",
"open_async",
"open_read_only",
"open_read_only_async",
"prepare_query",
"query",
"query_async",
"replay_log",
"schemas",
"storage",
"tql",
"types",
"TelemetryClient",
"telemetry_client"
]
def _tensorflow(self) -> Any:
from deeplake._tensorflow import _from_dataset
return _from_dataset(self)
def _pytorch(self, transform: Callable[[Any], Any] = None):
from deeplake._torch import TorchDataset
return TorchDataset(self, transform=transform)
DatasetView.pytorch = _pytorch
DatasetView.tensorflow = _tensorflow
def load(*args, **kwargs):
"""
.. deprecated:: 4.0.0
"""
raise Exception(
"""
The API for Deep Lake 4.0 has changed significantly, including the `load` method being replaced by `open`.
To continue using Deep Lake 3.x, use `pip install "deeplake<4"`.
For information on migrating your code, see https://docs.deeplake.ai/latest/details/v3_conversion/
""".replace(
"\n", " "
).strip()
)
def empty(*args, **kwargs):
"""
.. deprecated:: 4.0.0
"""
raise Exception(
"""
The API for Deep Lake 4.0 has changed significantly, including the `empty` method being replaced by `create`.
To continue using Deep Lake 3.x, use `pip install "deeplake<4"`.
For information on migrating your code, see https://docs.deeplake.ai/latest/details/v3_conversion/
""".replace(
"\n", " "
).strip()
)
def convert(
src: str,
dst: str,
dst_creds: Optional[Dict[str, str]] = None,
token: Optional[str] = None,
) -> None:
"""
Copies the v3 dataset at src into a new dataset in the new v4 format.
"""
def commit_data(dataset, message="Committing data"):
dataset.commit()
def get_raw_columns(source):
return [
col.name
for col in source.schema.columns
if not col.dtype.is_link and col.dtype.kind in {
deeplake.types.TypeKind.Image,
deeplake.types.TypeKind.SegmentMask,
deeplake.types.TypeKind.Medical,
}
]
def transfer_non_link_data(source, dest):
dl = deeplake._deeplake._Prefetcher(source, raw_columns=set(get_raw_columns(source)))
for counter, batch in enumerate(progress_bar(dl), start=1):
dest.append(batch)
if counter % 100 == 0:
commit_data(dest)
commit_data(dest, "Final commit of non-link data")
def transfer_with_links(source, dest, links, column_names):
iterable_cols = [col for col in column_names if col not in links]
link_sample_info = {link: source[link]._links_info() for link in links}
dest.set_creds_key(link_sample_info[links[0]]["key"])
quoted_cols = ['"' + col + '"' for col in iterable_cols]
joined_cols = ",".join(quoted_cols)
pref_ds = source.query(f"SELECT {joined_cols}")
dl = deeplake._deeplake._Prefetcher(pref_ds, raw_columns=set(get_raw_columns(source)))
for counter, batch in enumerate(progress_bar(dl), start=1):
batch_size = len(batch[iterable_cols[0]])
for link in links:
link_data = link_sample_info[link]["data"]
start_index = (counter - 1) * batch_size
end_index = min((counter) * batch_size, len(link_data))
batch[link] = link_data[start_index:end_index]
dest.append(batch)
if counter % 100 == 0:
commit_data(dest)
commit_data(dest, "Final commit of linked data")
source_ds = deeplake.query(f'SELECT * FROM "{src}"', token=token)
dest_ds = deeplake.like(source_ds, dst, dst_creds, token=token)
commit_data(dest_ds, "Created dataset")
column_names = [col.name for col in source_ds.schema.columns]
links = [
col.name
for col in source_ds.schema.columns
if source_ds.schema[col.name].dtype.is_link
]
print(f"Transferring {len(source_ds)} rows to {dst}...")
if not links:
transfer_non_link_data(source_ds, dest_ds)
else:
transfer_with_links(source_ds, dest_ds, links, column_names)
for column in column_names:
meta = dict(source_ds[column].metadata)
if meta:
for key, value in meta.items():
dest_ds[column].metadata[key] = value
commit_data(dest_ds, "Final commit of metadata")
print(f"Data transfer to {dst} complete.")
def __register_at_fork():
from ._deeplake import __prepare_atfork
UNSAFE_TYPES = (
Dataset,
DatasetView,
ReadOnlyDataset,
Column,
ColumnView,
ColumnDefinition,
ColumnDefinitionView,
Row,
RowView,
RowRange,
RowRangeView,
Schema,
SchemaView,
Version,
History,
Tag,
Tags,
)
def check_main_globals_for_unsafe_types():
import inspect
import warnings
frame = inspect.currentframe()
try:
while frame:
for key, value in frame.f_globals.items():
if isinstance(value, UNSAFE_TYPES):
warnings.warn(
f"Global variable '{key}' of type {type(value)} may cause issues when using fork-based multiprocessing. Consider avoiding global variables of this type, or pass to subprocess as an agrument or by manual pickling."
)
frame = frame.f_back
finally:
del frame
def before_fork():
check_main_globals_for_unsafe_types()
pass
def after_fork_parent():
pass
def after_fork_child():
pass
if platform.system() != "Windows":
os.register_at_fork(
before=before_fork,
after_in_parent=after_fork_parent,
after_in_child=after_fork_child,
)
ff = os.fork
def fork():
__prepare_atfork()
return ff()
os.fork = fork
__register_at_fork()