Commits

Commits on Aug 9, 2013

Also don't add 'final' everywhere. I think that's probably a little overzealous and intrusive.
dmyersturnbull
committed
dbd1f9f
Ran cleanup on AtomCache; this time didn't sort members.
dmyersturnbull
committed
fb269a7
Changed Eclipse formatter preferences: 1) Use tabs for indentation (I
dmyersturnbull
committed
06b9edd

Commits on Aug 8, 2013

Merge pull request #37 from ulyssecarion/peptide-bond-007
andreasprlic
committed
c6945e9
Set createAtomBonds to be true in TestBond
ucarion
committed
0d8b25a
Only form bonds if params has createAtomBonds set to true
ucarion
committed
3fd4c50
Add a createAtomBonds flag to FileParsingParameters
ucarion
committed
f9a5688
Add bond-parsing to PDBFileParser
ucarion
committed
56c53ea
Add a getAltLocGroup method to Groups, implement it in HetatomImpl
ucarion
committed
59d599c
Add a utility class to store information stored from LINK records
ucarion
committed
d2918ad
Add a utility method to convert a ChemCompBond's order into an int
ucarion
committed
6cba8e5
ChempComp and ChemCompConsumer now use ChemCompBonds.
ucarion
committed
8da82be
Comment out StructureTools.findBonds
ucarion
committed
3a57962
Add a getBonds() method to Atoms and implement it.
ucarion
committed
ca4063d
Introduce a new Bond class
ucarion
committed
2d013e1
Add tests for atom bonds
ucarion
committed
fd9599b
Fixing formatting with biojava lGPL header
andreasprlic
committed
48eedd8

Commits on Aug 7, 2013

Merge remote-tracking branch 'andreas/mmcif' into 'andreas/master'
sbliven
committed
23399b8

Commits on Aug 6, 2013

adding support for different types of file access
andreasprlic
committed
b2514e0
Merge pull request #36 from dmyersturnbull/master
dmyersturnbull
committed
05998a5

Commits on Jul 28, 2013

Ran cleanup on AtomCache.
dmyersturnbull
committed
4f33020
Made a general-purpose public method
dmyersturnbull
committed
cb9666d

Commits on Jul 22, 2013

Some of the URLs and Ids were swapped; critical fix.
dmyersturnbull
committed
c6c3c45
Critical null check of soft reference.
dmyersturnbull
committed
1a3ba4d

Commits on Jul 21, 2013

Commits on Jul 15, 2013

Swapped expected and test values, and added comments.
dmyersturnbull
committed
9a3d9ab
updating version info
andreasprlic
committed
750591e
[maven-release-plugin] prepare for next development iteration
Andreas Prlic
committed
023c8d5
[maven-release-plugin] prepare release biojava-3.0.6
Andreas Prlic
committed
426d148
Merge branch 'master' of github.com:biojava/biojava
Andreas Prlic
committed
d38e304
now using 4HHB as a standard example
Andreas Prlic
committed
be523bb
adding new calcRotationAngleInDegrees
Andreas Prlic
committed
867ac33

Commits on Jul 12, 2013