Added unit test

abradle · abradle · commit db7073806a61 · 2016-03-02T10:54:13.000-08:00
diff --git a/biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/Test1o2f.java b/biojava-integrationtest/src/test/java/org/biojava/nbio/structure/test/Test1o2f.java
@@ -0,0 +1,42 @@
+package org.biojava.nbio.structure.test;
+
+import org.biojava.nbio.structure.Chain;
+import org.biojava.nbio.structure.Group;
+import org.biojava.nbio.structure.Structure;
+import org.biojava.nbio.structure.StructureIO;
+import org.biojava.nbio.structure.align.util.AtomCache;
+import org.biojava.nbio.structure.io.FileParsingParameters;
+import org.biojava.nbio.structure.io.LocalPDBDirectory.FetchBehavior;
+
+import junit.framework.TestCase;
+
+public class Test1o2f extends TestCase{
+
+	private static Structure structure = null;
+
+
+	@Override
+	protected void setUp() throws Exception {
+		super.setUp();
+		AtomCache cache = new AtomCache();
+		cache.setUseMmCif(true);
+		cache.setFetchBehavior(FetchBehavior.FETCH_FILES);
+		FileParsingParameters params = cache.getFileParsingParams();
+		params.setLoadChemCompInfo(true);
+		params.setUseInternalChainId(true);
+		cache.setFileParsingParams(params);
+		StructureIO.setAtomCache(cache);
+		String pdbId = "1O2F";
+		structure = StructureIO.getStructure(pdbId);
+	}
+
+
+	public void test1a4wPDBFile(){
+		for(int i=0;i<structure.nrModels();i++){
+			for(Chain c: structure.getChains(i)){
+				assertNotNull(c.getChainID());
+				assertNotNull(c.getInternalChainID());
+			}
+		}
+	}
+}
