JavaDoc

luke czapla · luke czapla · commit c9a1dd96e6b5 · 2017-07-26T20:59:10.000-04:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/basepairs/BasePairParameters.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/basepairs/BasePairParameters.java
@@ -17,9 +17,6 @@
  *
  *      http://www.biojava.org/
  *
- * Created on 07-20-2017
- *
- * @author Luke Czapla
  *
  */
 package org.biojava.nbio.structure.basepairs;
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/basepairs/TertiaryBasePairParameters.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/basepairs/TertiaryBasePairParameters.java
@@ -35,7 +35,8 @@
 /**
  * This class also finds the base pairing and base-pair step parameters but has a broader definition
  * of a base pair so that non-canonical-WC base pairs will be detected and reported.  This is useful
- * for RNA that has folded into different regions, and higher order DNA structures.
+ * for RNA that has folded into different regions, and into higher order DNA structures.  Intra-strand
+ * pairings are considered in this class (but in not the base class or MismatchedBasePairParameters class)
  * @author Luke Czapla
  * @since 5.0.0
  *
@@ -106,7 +107,7 @@ public static double getMaxStagger() {
     }
 
     /**
-     *
+     * Set the maximum stagger allowed for a base pair, prior to analyze() call
      * @param maxStagger The maximum stagger allowed to consider two bases paired
      */
     public static void setMaxStagger(double maxStagger) {
@@ -119,7 +120,7 @@ public static double getMaxPropeller() {
     }
 
     /**
-     *
+     * Set the maximum propeller allowed for a base pair, prior to analyze() call
      * @param maxPropeller The maximum propeller (a.k.a. "propeller-twist") allowed to consider two bases paired
      */
     public static void setMaxPropeller(double maxPropeller) {

Original file line number	Diff line number	Diff line change
`@@ -17,9 +17,6 @@`
`17`	`17`	`*`
`18`	`18`	`* http://www.biojava.org/`
`19`	`19`	`*`
`20`		`- * Created on 07-20-2017`
`21`		`- *`
`22`		`- * @author Luke Czapla`
`23`	`20`	`*`
`24`	`21`	`*/`
`25`	`22`	`package org.biojava.nbio.structure.basepairs;`