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lines changed Original file line number Diff line number Diff line change 2424import org .biojava .nbio .structure .StructureException ;
2525import org .biojava .nbio .structure .align .gui .MultipleAlignmentDisplay ;
2626import org .biojava .nbio .structure .align .multiple .MultipleAlignment ;
27- import org .biojava .nbio .structure .align .multiple .TestSampleGenerator ;
27+ // import org.biojava.nbio.structure.align.multiple.TestSampleGenerator;
2828
2929/**
3030 * Demo for visualizing the results of a Multiple Alignment,
@@ -39,9 +39,12 @@ public static void main(String[] args)
3939 throws StructureException , IOException {
4040
4141 //Obtain a sample MultipleAlignment from the tests
42- MultipleAlignment msa = TestSampleGenerator .testAlignment2 ();
42+
43+ //TODO: this references a class from the testing section, needs to be fixed
44+
45+ //MultipleAlignment msa = TestSampleGenerator.testAlignment2();
4346
4447 //Displaying a MultipleAlignment is a one line code
45- MultipleAlignmentDisplay .display (msa );
48+ // MultipleAlignmentDisplay.display(msa);
4649 }
4750}
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