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Commits on Aug 14, 2018

• Update compilation instructions

  maaskola

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• Typeset publication titles in italics

  maaskola

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  0f70c31

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• Fix markdown line breaks

  maaskola

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  09014bc

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• Describe what is found in which repository

  maaskola

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Commits on Mar 21, 2017

• Merge branch 'master' of gits-15.sys.kth.se:maaskola/spatial-transcriptome-deconvolution

  maaskola

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  1b1c5e2

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• Armadillo's include directory as system directory

  maaskola

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  45e1ae2

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Commits on Feb 21, 2017

• Change debug build postfix

  maaskola

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  76c5a80

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• Fix: in wrong directory

  maaskola

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  88f13dc

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• Support multiple build targets

  maaskola

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  47ea69e

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• Add postfix to debug library and binary names

  maaskola

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  01c6f70

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• Store build type

  maaskola

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Commits on Feb 15, 2017

• Merge branch 'master' of gits-15.sys.kth.se:maaskola/spatial-transcriptome-deconvolution

  maaskola

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  9926836

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• Force-set the experiment-local hyper-parameters

  maaskola

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Commits on Feb 1, 2017

• Avoid trying to normalize rates when count is zero

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  maaskola

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  c570489

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• Change default parameter value

  maaskola

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  61d8b1d

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Commits on Jan 23, 2017

• PDF for convolved negative binomial distributions

  maaskola

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  67da8ea

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• Abort special cases of gamma distribution

  maaskola

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  e66674c

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• Add test program for gamma convolution code

  maaskola

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  9a8c46c

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• Debug output for gamma convolution PDF calculation

  maaskola

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  93421fb

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• PDF of sum of independent gamma distributions

  maaskola

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  8be3cce

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Commits on Dec 15, 2016

• Merge branch 'master' of gits-15.sys.kth.se:maaskola/spatial-transcriptome-deconvolution

  maaskola

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  aa86ed3

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• Specify minimum required version of Armadillo

  maaskola

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Commits on Dec 14, 2016

• Factor code

  maaskola

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  522e577

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• Drop alternative code for theta prior sampling

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  maaskola

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  459f2a9

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• Fix: missing include

  maaskola

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  9bc61f8

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• Clang-format and name semantically: "explained"

  maaskola

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  256f900

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• Factor code

  maaskola

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  a79a348

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• Don't reallocate variable in loop

  maaskola

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  9deddf3

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• Use explained numbers for theta and phi priors

  maaskola

  committed
  c39011c

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• Fix explained formula

  maaskola

  committed
  4ca3186

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• Prefer an outer level for parallelization

  maaskola

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  4b74c78

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• Possibly avoid copying

  maaskola

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  4c1118b

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Commits on Dec 13, 2016

• Print dropout statistics in verbose mode

  maaskola

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  45d95d7

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• Dropout for genes

  maaskola

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  42afb6f

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• Anneal the dropout rate

  maaskola

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