Create TreeConstructorType (replace TreeType)

lafita · lafita · commit 94835bc46de5 · 2015-11-16T17:39:16.000+01:00
diff --git a/biojava-phylo/src/main/java/org/biojava/nbio/phylo/TreeConstructorType.java b/biojava-phylo/src/main/java/org/biojava/nbio/phylo/TreeConstructorType.java
@@ -0,0 +1,46 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
+/*
+ * To change this template, choose Tools | Templates
+ * and open the template in the editor.
+ */
+package org.biojava.nbio.phylo;
+
+/**
+ * The TreeConstructorType specifies the aligorithm used to construct the tree
+ * (clustering algorithm). Only support for the NJ algorithm (from forester) is
+ * currently implemented.
+ * 
+ * @author Aleix Lafita
+ * @since 4.1.1
+ * 
+ */
+public enum TreeConstructorType {
+
+	/** Neighbor Joining Algorithm */
+	NJ,
+
+	/** Unweighted Pair-Group Method with Arithmetic mean */
+	UPGMA,
+
+	/** What does this stand for? (Aleix: Nov 2015) */
+	AV;
+}
