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Commit 488b8b5

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pwrosepwrose
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Check for null when accessing insertion codes. This fixes biojava#761.
1 parent 26b5da3 commit 488b8b5

1 file changed

Lines changed: 4 additions & 2 deletions

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  • biojava-structure/src/main/java/org/biojava/nbio/structure/io

‎biojava-structure/src/main/java/org/biojava/nbio/structure/io/BondMaker.java‎

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -362,9 +362,11 @@ public void formBondsFromStructConn(List<StructConn> structConn) {
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chainId2 = conn.getPtnr2_label_asym_id();
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String insCode1 = "";
365-
if (!conn.getPdbx_ptnr1_PDB_ins_code().equals("?")) insCode1 = conn.getPdbx_ptnr1_PDB_ins_code();
365+
if (conn.getPdbx_ptnr1_PDB_ins_code() != null &&
366+
!conn.getPdbx_ptnr1_PDB_ins_code().equals("?")) insCode1 = conn.getPdbx_ptnr1_PDB_ins_code();
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String insCode2 = "";
367-
if (!conn.getPdbx_ptnr2_PDB_ins_code().equals("?")) insCode2 = conn.getPdbx_ptnr2_PDB_ins_code();
368+
if (conn.getPdbx_ptnr2_PDB_ins_code() != null &&
369+
!conn.getPdbx_ptnr2_PDB_ins_code().equals("?")) insCode2 = conn.getPdbx_ptnr2_PDB_ins_code();
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String seqId1 = conn.getPtnr1_auth_seq_id();
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String seqId2 = conn.getPtnr2_auth_seq_id();

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