Run development/addlicense.sh

sbliven · sbliven · commit af1e28709e26 · 2019-01-02T19:00:57.000+01:00
diff --git a/biojava-ontology/src/main/java/org/biojava/nbio/ontology/io/package-info.java b/biojava-ontology/src/main/java/org/biojava/nbio/ontology/io/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * <BODY>
  * <P>
diff --git a/biojava-ontology/src/main/java/package-info.java b/biojava-ontology/src/main/java/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * <BODY>
  * <P>
diff --git a/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/jmol/package-info.java b/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/jmol/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Utility methods for better interaction with Jmol.
  */
diff --git a/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/webstart/package-info.java b/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/webstart/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Classes related to Java Web Start
  */
diff --git a/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/gui/events/package-info.java b/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/gui/events/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * <BODY>
  * <P>
diff --git a/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/gui/package-info.java b/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/gui/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * <BODY>
  * <P>
diff --git a/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/gui/util/package-info.java b/biojava-structure-gui/src/main/java/org/biojava/nbio/structure/gui/util/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * <BODY>
  * <P>
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/ce/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/ce/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Classes related to the implementation of the CE alignment algorithm, here called jCE.
  *
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/client/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/client/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * This package deals with the server communication for auto-downloading pre-calculated alignments.
  */
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/fatcat/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/fatcat/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
  *
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/helper/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/helper/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Helper classes for structural alignment.
  */
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Classes for the alignment of structures. This is the unpublished legacy implementation from the time,
  * before BioJava supported <a href="ce/CeMain.html">CE</a> and FATCAT alignments.
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/pairwise/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/pairwise/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Classes for the pairwise alignment of structures.
  */
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/align/xml/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/align/xml/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Serialization and deserialization for structure alignment results (as AFPChain object) to XML.
  */
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/model/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/model/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Datamodel objects used for processing mmcif files. This are beans that can represent the data from a category in mmcif.
  */
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/package-info.java
@@ -1,3 +1,23 @@
+/*
+ *                    BioJava development code
+ *
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  If you do not have a copy,
+ * see:
+ *
+ *      http://www.gnu.org/copyleft/lesser.html
+ *
+ * Copyright for this code is held jointly by the individual
+ * authors.  These should be listed in @author doc comments.
+ *
+ * For more information on the BioJava project and its aims,
+ * or to join the biojava-l mailing list, visit the home page
+ * at:
+ *
+ *      http://www.biojava.org/
+ *
+ */
 /**
  * Input and Output of mmcif files.
  *
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/package-info.java
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/jama/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/jama/package-info.java
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/package-info.java
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/scop/package-info.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/scop/package-info.java
diff --git a/biojava-structure/src/test/java/org/biojava/nbio/structure/test/util/GlobalsHelper.java b/biojava-structure/src/test/java/org/biojava/nbio/structure/test/util/GlobalsHelper.java
diff --git a/biojava-ws/src/main/java/org/biojava/nbio/ws/alignment/package-info.java b/biojava-ws/src/main/java/org/biojava/nbio/ws/alignment/package-info.java
