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<h1>Source code for ot.lowrank</h1><div class="highlight"><pre>
<span></span><span class="sd">"""</span>
<span class="sd">Low rank OT solvers</span>
<span class="sd">"""</span>
<span class="c1"># Author: Laurène David <laurene.david@ip-paris.fr></span>
<span class="c1"># Titouan Vayer <titouan.vayer@inria.fr></span>
<span class="c1">#</span>
<span class="c1"># License: MIT License</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">warnings</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">.utils</span><span class="w"> </span><span class="kn">import</span> <span class="n">unif</span><span class="p">,</span> <span class="n">dist</span><span class="p">,</span> <span class="n">get_lowrank_lazytensor</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">.backend</span><span class="w"> </span><span class="kn">import</span> <span class="n">get_backend</span>
<span class="kn">from</span><span class="w"> </span><span class="nn">.bregman</span><span class="w"> </span><span class="kn">import</span> <span class="n">sinkhorn</span>
<span class="c1"># test if sklearn is installed for linux-minimal-deps</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">import</span><span class="w"> </span><span class="nn">sklearn.cluster</span>
<span class="n">sklearn_import</span> <span class="o">=</span> <span class="kc">True</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="n">sklearn_import</span> <span class="o">=</span> <span class="kc">False</span>
<span class="k">def</span><span class="w"> </span><span class="nf">_init_lr_sinkhorn</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">rank</span><span class="p">,</span> <span class="n">init</span><span class="p">,</span> <span class="n">reg_init</span><span class="p">,</span> <span class="n">random_state</span><span class="p">,</span> <span class="n">nx</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="w"> </span><span class="sd">"""</span>
<span class="sd"> Implementation of different initialization strategies for the low rank sinkhorn solver (Q ,R, g).</span>
<span class="sd"> This function is specific to lowrank_sinkhorn.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> X_s : array-like, shape (n_samples_a, dim)</span>
<span class="sd"> samples in the source domain</span>
<span class="sd"> X_t : array-like, shape (n_samples_b, dim)</span>
<span class="sd"> samples in the target domain</span>
<span class="sd"> a : array-like, shape (n_samples_a,)</span>
<span class="sd"> samples weights in the source domain</span>
<span class="sd"> b : array-like, shape (n_samples_b,)</span>
<span class="sd"> samples weights in the target domain</span>
<span class="sd"> rank : int</span>
<span class="sd"> Nonnegative rank of the OT plan.</span>
<span class="sd"> init : str</span>
<span class="sd"> Initialization strategy for Q, R and g. 'random', 'trivial' or 'kmeans'</span>
<span class="sd"> reg_init : float, optional.</span>
<span class="sd"> Regularization term for a 'kmeans' init.</span>
<span class="sd"> random_state : int, optional.</span>
<span class="sd"> Random state for a "random" or 'kmeans' init strategy</span>
<span class="sd"> nx : optional, Default is None</span>
<span class="sd"> POT backend</span>
<span class="sd"> Returns</span>
<span class="sd"> ---------</span>
<span class="sd"> Q : array-like, shape (n_samples_a, r)</span>
<span class="sd"> Init for the first low-rank matrix decomposition of the OT plan (Q)</span>
<span class="sd"> R: array-like, shape (n_samples_b, r)</span>
<span class="sd"> Init for the second low-rank matrix decomposition of the OT plan (R)</span>
<span class="sd"> g : array-like, shape (r, )</span>
<span class="sd"> Init for the weight vector of the low-rank decomposition of the OT plan (g)</span>
<span class="sd"> References</span>
<span class="sd"> -----------</span>
<span class="sd"> .. [65] Scetbon, M., Cuturi, M., & Peyré, G. (2021).</span>
<span class="sd"> "Low-rank Sinkhorn factorization". In International Conference on Machine Learning.</span>
<span class="sd"> """</span>
<span class="k">if</span> <span class="n">nx</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">nx</span> <span class="o">=</span> <span class="n">get_backend</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">)</span>
<span class="n">ns</span> <span class="o">=</span> <span class="n">X_s</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="n">nt</span> <span class="o">=</span> <span class="n">X_t</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="n">r</span> <span class="o">=</span> <span class="n">rank</span>
<span class="k">if</span> <span class="n">init</span> <span class="o">==</span> <span class="s2">"random"</span><span class="p">:</span>
<span class="n">nx</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="n">seed</span><span class="o">=</span><span class="n">random_state</span><span class="p">)</span>
<span class="c1"># Init g</span>
<span class="n">g</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">))</span> <span class="o">+</span> <span class="mi">1</span>
<span class="n">g</span> <span class="o">=</span> <span class="n">g</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">g</span><span class="p">)</span>
<span class="c1"># Init Q</span>
<span class="n">Q</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="n">ns</span><span class="p">,</span> <span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">))</span> <span class="o">+</span> <span class="mi">1</span>
<span class="n">Q</span> <span class="o">=</span> <span class="p">(</span><span class="n">Q</span><span class="o">.</span><span class="n">T</span> <span class="o">*</span> <span class="p">(</span><span class="n">a</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">Q</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)))</span><span class="o">.</span><span class="n">T</span>
<span class="c1"># Init R</span>
<span class="n">R</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="n">nt</span><span class="p">,</span> <span class="n">rank</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">))</span> <span class="o">+</span> <span class="mi">1</span>
<span class="n">R</span> <span class="o">=</span> <span class="p">(</span><span class="n">R</span><span class="o">.</span><span class="n">T</span> <span class="o">*</span> <span class="p">(</span><span class="n">b</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">R</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)))</span><span class="o">.</span><span class="n">T</span>
<span class="k">if</span> <span class="n">init</span> <span class="o">==</span> <span class="s2">"deterministic"</span><span class="p">:</span>
<span class="c1"># Init g</span>
<span class="n">g</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">rank</span><span class="p">)</span> <span class="o">/</span> <span class="n">rank</span>
<span class="n">lambda_1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">a</span><span class="p">),</span> <span class="n">nx</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">g</span><span class="p">),</span> <span class="n">nx</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">b</span><span class="p">))</span> <span class="o">/</span> <span class="mi">2</span>
<span class="n">a1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">start</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">stop</span><span class="o">=</span><span class="n">ns</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span>
<span class="n">a1</span> <span class="o">=</span> <span class="n">a1</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">a1</span><span class="p">)</span>
<span class="n">a2</span> <span class="o">=</span> <span class="p">(</span><span class="n">a</span> <span class="o">-</span> <span class="n">lambda_1</span> <span class="o">*</span> <span class="n">a1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">lambda_1</span><span class="p">)</span>
<span class="n">b1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">start</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">stop</span><span class="o">=</span><span class="n">nt</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span>
<span class="n">b1</span> <span class="o">=</span> <span class="n">b1</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">b1</span><span class="p">)</span>
<span class="n">b2</span> <span class="o">=</span> <span class="p">(</span><span class="n">b</span> <span class="o">-</span> <span class="n">lambda_1</span> <span class="o">*</span> <span class="n">b1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">lambda_1</span><span class="p">)</span>
<span class="n">g1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">start</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">stop</span><span class="o">=</span><span class="n">rank</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span>
<span class="n">g1</span> <span class="o">=</span> <span class="n">g1</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">g1</span><span class="p">)</span>
<span class="n">g2</span> <span class="o">=</span> <span class="p">(</span><span class="n">g</span> <span class="o">-</span> <span class="n">lambda_1</span> <span class="o">*</span> <span class="n">g1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">lambda_1</span><span class="p">)</span>
<span class="c1"># Init Q</span>
<span class="n">Q1</span> <span class="o">=</span> <span class="n">lambda_1</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">a1</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">],</span> <span class="n">nx</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">)))</span>
<span class="n">Q2</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">lambda_1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">a2</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">],</span> <span class="n">nx</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">g2</span><span class="p">,</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">)))</span>
<span class="n">Q</span> <span class="o">=</span> <span class="n">Q1</span> <span class="o">+</span> <span class="n">Q2</span>
<span class="c1"># Init R</span>
<span class="n">R1</span> <span class="o">=</span> <span class="n">lambda_1</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">b1</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">],</span> <span class="n">nx</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">g1</span><span class="p">,</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">)))</span>
<span class="n">R2</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">lambda_1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">b2</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">],</span> <span class="n">nx</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">g2</span><span class="p">,</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">)))</span>
<span class="n">R</span> <span class="o">=</span> <span class="n">R1</span> <span class="o">+</span> <span class="n">R2</span>
<span class="k">if</span> <span class="n">init</span> <span class="o">==</span> <span class="s2">"kmeans"</span><span class="p">:</span>
<span class="k">if</span> <span class="n">sklearn_import</span><span class="p">:</span>
<span class="c1"># Init g</span>
<span class="n">g</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">rank</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span> <span class="o">/</span> <span class="n">rank</span>
<span class="c1"># Init Q</span>
<span class="n">kmeans_Xs</span> <span class="o">=</span> <span class="n">sklearn</span><span class="o">.</span><span class="n">cluster</span><span class="o">.</span><span class="n">KMeans</span><span class="p">(</span>
<span class="n">n_clusters</span><span class="o">=</span><span class="n">rank</span><span class="p">,</span> <span class="n">random_state</span><span class="o">=</span><span class="n">random_state</span><span class="p">,</span> <span class="n">n_init</span><span class="o">=</span><span class="s2">"auto"</span>
<span class="p">)</span>
<span class="n">kmeans_Xs</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_s</span><span class="p">)</span>
<span class="n">Z_Xs</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">from_numpy</span><span class="p">(</span><span class="n">kmeans_Xs</span><span class="o">.</span><span class="n">cluster_centers_</span><span class="p">)</span>
<span class="n">C_Xs</span> <span class="o">=</span> <span class="n">dist</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">Z_Xs</span><span class="p">)</span> <span class="c1"># shape (ns, rank)</span>
<span class="n">C_Xs</span> <span class="o">=</span> <span class="n">C_Xs</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">C_Xs</span><span class="p">)</span>
<span class="n">Q</span> <span class="o">=</span> <span class="n">sinkhorn</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">g</span><span class="p">,</span> <span class="n">C_Xs</span><span class="p">,</span> <span class="n">reg</span><span class="o">=</span><span class="n">reg_init</span><span class="p">,</span> <span class="n">numItermax</span><span class="o">=</span><span class="mi">10000</span><span class="p">,</span> <span class="n">stopThr</span><span class="o">=</span><span class="mf">1e-3</span><span class="p">)</span>
<span class="c1"># Init R</span>
<span class="n">kmeans_Xt</span> <span class="o">=</span> <span class="n">sklearn</span><span class="o">.</span><span class="n">cluster</span><span class="o">.</span><span class="n">KMeans</span><span class="p">(</span>
<span class="n">n_clusters</span><span class="o">=</span><span class="n">rank</span><span class="p">,</span> <span class="n">random_state</span><span class="o">=</span><span class="n">random_state</span><span class="p">,</span> <span class="n">n_init</span><span class="o">=</span><span class="s2">"auto"</span>
<span class="p">)</span>
<span class="n">kmeans_Xt</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">X_t</span><span class="p">)</span>
<span class="n">Z_Xt</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">from_numpy</span><span class="p">(</span><span class="n">kmeans_Xt</span><span class="o">.</span><span class="n">cluster_centers_</span><span class="p">)</span>
<span class="n">C_Xt</span> <span class="o">=</span> <span class="n">dist</span><span class="p">(</span><span class="n">X_t</span><span class="p">,</span> <span class="n">Z_Xt</span><span class="p">)</span> <span class="c1"># shape (nt, rank)</span>
<span class="n">C_Xt</span> <span class="o">=</span> <span class="n">C_Xt</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">C_Xt</span><span class="p">)</span>
<span class="n">R</span> <span class="o">=</span> <span class="n">sinkhorn</span><span class="p">(</span><span class="n">b</span><span class="p">,</span> <span class="n">g</span><span class="p">,</span> <span class="n">C_Xt</span><span class="p">,</span> <span class="n">reg</span><span class="o">=</span><span class="n">reg_init</span><span class="p">,</span> <span class="n">numItermax</span><span class="o">=</span><span class="mi">10000</span><span class="p">,</span> <span class="n">stopThr</span><span class="o">=</span><span class="mf">1e-3</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ImportError</span><span class="p">(</span>
<span class="s2">"Scikit-learn should be installed to use the 'kmeans' init."</span>
<span class="p">)</span>
<span class="k">return</span> <span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">g</span>
<div class="viewcode-block" id="compute_lr_sqeuclidean_matrix">
<a class="viewcode-back" href="../../gen_modules/ot.lowrank.html#ot.compute_lr_sqeuclidean_matrix">[docs]</a>
<span class="k">def</span><span class="w"> </span><span class="nf">compute_lr_sqeuclidean_matrix</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">,</span> <span class="n">rescale_cost</span><span class="p">,</span> <span class="n">nx</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="w"> </span><span class="sd">"""</span>
<span class="sd"> Compute the low rank decomposition of a squared euclidean distance matrix.</span>
<span class="sd"> This function won't work for other distance metrics.</span>
<span class="sd"> See "Section 3.5, proposition 1"</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> X_s : array-like, shape (n_samples_a, dim)</span>
<span class="sd"> samples in the source domain</span>
<span class="sd"> X_t : array-like, shape (n_samples_b, dim)</span>
<span class="sd"> samples in the target domain</span>
<span class="sd"> rescale_cost : bool</span>
<span class="sd"> Rescale the low rank factorization of the sqeuclidean cost matrix</span>
<span class="sd"> nx : default None</span>
<span class="sd"> POT backend</span>
<span class="sd"> Returns</span>
<span class="sd"> ----------</span>
<span class="sd"> M1 : array-like, shape (n_samples_a, dim+2)</span>
<span class="sd"> First low rank decomposition of the distance matrix</span>
<span class="sd"> M2 : array-like, shape (n_samples_b, dim+2)</span>
<span class="sd"> Second low rank decomposition of the distance matrix</span>
<span class="sd"> References</span>
<span class="sd"> -----------</span>
<span class="sd"> .. [65] Scetbon, M., Cuturi, M., & Peyré, G. (2021).</span>
<span class="sd"> "Low-rank Sinkhorn factorization". In International Conference on Machine Learning.</span>
<span class="sd"> """</span>
<span class="k">if</span> <span class="n">nx</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">nx</span> <span class="o">=</span> <span class="n">get_backend</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">)</span>
<span class="n">ns</span> <span class="o">=</span> <span class="n">X_s</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="n">nt</span> <span class="o">=</span> <span class="n">X_t</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="c1"># First low rank decomposition of the cost matrix (A)</span>
<span class="n">array1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">X_s</span><span class="o">**</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
<span class="n">array2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="n">ns</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span>
<span class="n">M1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">array1</span><span class="p">,</span> <span class="n">array2</span><span class="p">,</span> <span class="o">-</span><span class="mi">2</span> <span class="o">*</span> <span class="n">X_s</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="c1"># Second low rank decomposition of the cost matrix (B)</span>
<span class="n">array1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="n">nt</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span>
<span class="n">array2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">X_t</span><span class="o">**</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
<span class="n">M2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">array1</span><span class="p">,</span> <span class="n">array2</span><span class="p">,</span> <span class="n">X_t</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="k">if</span> <span class="n">rescale_cost</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
<span class="n">M1</span> <span class="o">=</span> <span class="n">M1</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">M1</span><span class="p">))</span>
<span class="n">M2</span> <span class="o">=</span> <span class="n">M2</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">M2</span><span class="p">))</span>
<span class="k">return</span> <span class="n">M1</span><span class="p">,</span> <span class="n">M2</span></div>
<span class="k">def</span><span class="w"> </span><span class="nf">_LR_Dysktra</span><span class="p">(</span><span class="n">eps1</span><span class="p">,</span> <span class="n">eps2</span><span class="p">,</span> <span class="n">eps3</span><span class="p">,</span> <span class="n">p1</span><span class="p">,</span> <span class="n">p2</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">stopThr</span><span class="p">,</span> <span class="n">numItermax</span><span class="p">,</span> <span class="n">warn</span><span class="p">,</span> <span class="n">nx</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="w"> </span><span class="sd">"""</span>
<span class="sd"> Implementation of the Dykstra algorithm for the Low Rank sinkhorn OT solver.</span>
<span class="sd"> This function is specific to lowrank_sinkhorn.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> eps1 : array-like, shape (n_samples_a, r)</span>
<span class="sd"> First input parameter of the Dykstra algorithm</span>
<span class="sd"> eps2 : array-like, shape (n_samples_b, r)</span>
<span class="sd"> Second input parameter of the Dykstra algorithm</span>
<span class="sd"> eps3 : array-like, shape (r,)</span>
<span class="sd"> Third input parameter of the Dykstra algorithm</span>
<span class="sd"> p1 : array-like, shape (n_samples_a,)</span>
<span class="sd"> Samples weights in the source domain (same as "a" in lowrank_sinkhorn)</span>
<span class="sd"> p2 : array-like, shape (n_samples_b,)</span>
<span class="sd"> Samples weights in the target domain (same as "b" in lowrank_sinkhorn)</span>
<span class="sd"> alpha: int</span>
<span class="sd"> Lower bound for the weight vector g (same as "alpha" in lowrank_sinkhorn)</span>
<span class="sd"> stopThr : float</span>
<span class="sd"> Stop threshold on error</span>
<span class="sd"> numItermax : int</span>
<span class="sd"> Max number of iterations</span>
<span class="sd"> warn : bool, optional</span>
<span class="sd"> if True, raises a warning if the algorithm doesn't convergence.</span>
<span class="sd"> nx : default None</span>
<span class="sd"> POT backend</span>
<span class="sd"> Returns</span>
<span class="sd"> ----------</span>
<span class="sd"> Q : array-like, shape (n_samples_a, r)</span>
<span class="sd"> Dykstra update of the first low-rank matrix decomposition Q</span>
<span class="sd"> R: array-like, shape (n_samples_b, r)</span>
<span class="sd"> Dykstra update of the Second low-rank matrix decomposition R</span>
<span class="sd"> g : array-like, shape (r, )</span>
<span class="sd"> Dykstra update of the weight vector g</span>
<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> .. [65] Scetbon, M., Cuturi, M., & Peyré, G. (2021).</span>
<span class="sd"> "Low-rank Sinkhorn Factorization". In International Conference on Machine Learning.</span>
<span class="sd"> """</span>
<span class="c1"># POT backend if None</span>
<span class="k">if</span> <span class="n">nx</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">nx</span> <span class="o">=</span> <span class="n">get_backend</span><span class="p">(</span><span class="n">eps1</span><span class="p">,</span> <span class="n">eps2</span><span class="p">,</span> <span class="n">eps3</span><span class="p">,</span> <span class="n">p1</span><span class="p">,</span> <span class="n">p2</span><span class="p">)</span>
<span class="c1"># ----------------- Initialisation of Dykstra algorithm -----------------</span>
<span class="n">r</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">eps3</span><span class="p">)</span> <span class="c1"># rank</span>
<span class="n">g_</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">eps3</span><span class="p">)</span> <span class="c1"># \tilde{g}</span>
<span class="n">q3_1</span><span class="p">,</span> <span class="n">q3_2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">p1</span><span class="p">),</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">p1</span><span class="p">)</span> <span class="c1"># q^{(3)}_1, q^{(3)}_2</span>
<span class="n">v1_</span><span class="p">,</span> <span class="n">v2_</span> <span class="o">=</span> <span class="p">(</span>
<span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">p1</span><span class="p">),</span>
<span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">p1</span><span class="p">),</span>
<span class="p">)</span> <span class="c1"># \tilde{v}^{(1)}, \tilde{v}^{(2)}</span>
<span class="n">q1</span><span class="p">,</span> <span class="n">q2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">p1</span><span class="p">),</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">p1</span><span class="p">)</span> <span class="c1"># q^{(1)}, q^{(2)}</span>
<span class="n">err</span> <span class="o">=</span> <span class="mi">1</span> <span class="c1"># initial error</span>
<span class="c1"># --------------------- Dykstra algorithm -------------------------</span>
<span class="c1"># See Section 3.3 - "Algorithm 2 LR-Dykstra" in paper</span>
<span class="k">for</span> <span class="n">ii</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">numItermax</span><span class="p">):</span>
<span class="k">if</span> <span class="n">err</span> <span class="o">></span> <span class="n">stopThr</span><span class="p">:</span>
<span class="c1"># Compute u^{(1)} and u^{(2)}</span>
<span class="n">u1</span> <span class="o">=</span> <span class="n">p1</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">eps1</span><span class="p">,</span> <span class="n">v1_</span><span class="p">)</span>
<span class="n">u2</span> <span class="o">=</span> <span class="n">p2</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">eps2</span><span class="p">,</span> <span class="n">v2_</span><span class="p">)</span>
<span class="c1"># Compute g, g^{(3)}_1 and update \tilde{g}</span>
<span class="n">g</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">maximum</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">g_</span> <span class="o">*</span> <span class="n">q3_1</span><span class="p">)</span>
<span class="n">q3_1</span> <span class="o">=</span> <span class="p">(</span><span class="n">g_</span> <span class="o">*</span> <span class="n">q3_1</span><span class="p">)</span> <span class="o">/</span> <span class="n">g</span>
<span class="n">g_</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">g</span><span class="p">)</span>
<span class="c1"># Compute new value of g with \prod</span>
<span class="n">prod1</span> <span class="o">=</span> <span class="p">(</span><span class="n">v1_</span> <span class="o">*</span> <span class="n">q1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">eps1</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">u1</span><span class="p">)</span>
<span class="n">prod2</span> <span class="o">=</span> <span class="p">(</span><span class="n">v2_</span> <span class="o">*</span> <span class="n">q2</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">eps2</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">u2</span><span class="p">)</span>
<span class="n">g</span> <span class="o">=</span> <span class="p">(</span><span class="n">g_</span> <span class="o">*</span> <span class="n">q3_2</span> <span class="o">*</span> <span class="n">prod1</span> <span class="o">*</span> <span class="n">prod2</span><span class="p">)</span> <span class="o">**</span> <span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">3</span><span class="p">)</span>
<span class="c1"># Compute v^{(1)} and v^{(2)}</span>
<span class="n">v1</span> <span class="o">=</span> <span class="n">g</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">eps1</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">u1</span><span class="p">)</span>
<span class="n">v2</span> <span class="o">=</span> <span class="n">g</span> <span class="o">/</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">eps2</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">u2</span><span class="p">)</span>
<span class="c1"># Compute q^{(1)}, q^{(2)} and q^{(3)}_2</span>
<span class="n">q1</span> <span class="o">=</span> <span class="p">(</span><span class="n">v1_</span> <span class="o">*</span> <span class="n">q1</span><span class="p">)</span> <span class="o">/</span> <span class="n">v1</span>
<span class="n">q2</span> <span class="o">=</span> <span class="p">(</span><span class="n">v2_</span> <span class="o">*</span> <span class="n">q2</span><span class="p">)</span> <span class="o">/</span> <span class="n">v2</span>
<span class="n">q3_2</span> <span class="o">=</span> <span class="p">(</span><span class="n">g_</span> <span class="o">*</span> <span class="n">q3_2</span><span class="p">)</span> <span class="o">/</span> <span class="n">g</span>
<span class="c1"># Update values of \tilde{v}^{(1)}, \tilde{v}^{(2)} and \tilde{g}</span>
<span class="n">v1_</span><span class="p">,</span> <span class="n">v2_</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">v1</span><span class="p">),</span> <span class="n">nx</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">v2</span><span class="p">)</span>
<span class="n">g_</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">g</span><span class="p">)</span>
<span class="c1"># Compute error</span>
<span class="n">err1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">u1</span> <span class="o">*</span> <span class="p">(</span><span class="n">eps1</span> <span class="o">@</span> <span class="n">v1</span><span class="p">)</span> <span class="o">-</span> <span class="n">p1</span><span class="p">))</span>
<span class="n">err2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">u2</span> <span class="o">*</span> <span class="p">(</span><span class="n">eps2</span> <span class="o">@</span> <span class="n">v2</span><span class="p">)</span> <span class="o">-</span> <span class="n">p2</span><span class="p">))</span>
<span class="n">err</span> <span class="o">=</span> <span class="n">err1</span> <span class="o">+</span> <span class="n">err2</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">break</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">if</span> <span class="n">warn</span><span class="p">:</span>
<span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
<span class="s2">"Dykstra did not converge. You might want to "</span>
<span class="s2">"increase the number of iterations `numItermax` "</span>
<span class="p">)</span>
<span class="c1"># Compute low rank matrices Q, R</span>
<span class="n">Q</span> <span class="o">=</span> <span class="n">u1</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">eps1</span> <span class="o">*</span> <span class="n">v1</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:]</span>
<span class="n">R</span> <span class="o">=</span> <span class="n">u2</span><span class="p">[:,</span> <span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">eps2</span> <span class="o">*</span> <span class="n">v2</span><span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:]</span>
<span class="k">return</span> <span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">g</span>
<div class="viewcode-block" id="lowrank_sinkhorn">
<a class="viewcode-back" href="../../gen_modules/ot.lowrank.html#ot.lowrank_sinkhorn">[docs]</a>
<span class="k">def</span><span class="w"> </span><span class="nf">lowrank_sinkhorn</span><span class="p">(</span>
<span class="n">X_s</span><span class="p">,</span>
<span class="n">X_t</span><span class="p">,</span>
<span class="n">a</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">b</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">reg</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span>
<span class="n">rank</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">alpha</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">,</span>
<span class="n">rescale_cost</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
<span class="n">init</span><span class="o">=</span><span class="s2">"random"</span><span class="p">,</span>
<span class="n">reg_init</span><span class="o">=</span><span class="mf">1e-1</span><span class="p">,</span>
<span class="n">seed_init</span><span class="o">=</span><span class="mi">49</span><span class="p">,</span>
<span class="n">gamma_init</span><span class="o">=</span><span class="s2">"rescale"</span><span class="p">,</span>
<span class="n">numItermax</span><span class="o">=</span><span class="mi">2000</span><span class="p">,</span>
<span class="n">stopThr</span><span class="o">=</span><span class="mf">1e-7</span><span class="p">,</span>
<span class="n">warn</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
<span class="n">log</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
<span class="p">):</span>
<span class="w"> </span><span class="sa">r</span><span class="sd">"""</span>
<span class="sd"> Solve the entropic regularization optimal transport problem under low-nonnegative rank constraints</span>
<span class="sd"> on the couplings.</span>
<span class="sd"> The function solves the following optimization problem:</span>
<span class="sd"> .. math::</span>
<span class="sd"> \mathop{\inf_{(\mathbf{Q},\mathbf{R},\mathbf{g}) \in \mathcal{C}(\mathbf{a},\mathbf{b},r)}} \langle \mathbf{C}, \mathbf{Q}\mathrm{diag}(1/\mathbf{g})\mathbf{R}^\top \rangle -</span>
<span class="sd"> \mathrm{reg} \cdot H((\mathbf{Q}, \mathbf{R}, \mathbf{g}))</span>
<span class="sd"> where :</span>
<span class="sd"> - :math:`\mathbf{C}` is the (`dim_a`, `dim_b`) metric cost matrix</span>
<span class="sd"> - :math:`H((\mathbf{Q}, \mathbf{R}, \mathbf{g}))` is the values of the three respective entropies evaluated for each term.</span>
<span class="sd"> - :math:`\mathbf{Q}` and :math:`\mathbf{R}` are the low-rank matrix decomposition of the OT plan</span>
<span class="sd"> - :math:`\mathbf{g}` is the weight vector for the low-rank decomposition of the OT plan</span>
<span class="sd"> - :math:`\mathbf{a}` and :math:`\mathbf{b}` are source and target weights (histograms, both sum to 1)</span>
<span class="sd"> - :math:`r` is the rank of the OT plan</span>
<span class="sd"> - :math:`\mathcal{C}(\mathbf{a}, \mathbf{b}, r)` are the low-rank couplings of the OT problem</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> X_s : array-like, shape (n_samples_a, dim)</span>
<span class="sd"> samples in the source domain</span>
<span class="sd"> X_t : array-like, shape (n_samples_b, dim)</span>
<span class="sd"> samples in the target domain</span>
<span class="sd"> a : array-like, shape (n_samples_a,)</span>
<span class="sd"> samples weights in the source domain</span>
<span class="sd"> b : array-like, shape (n_samples_b,)</span>
<span class="sd"> samples weights in the target domain</span>
<span class="sd"> reg : float, optional</span>
<span class="sd"> Regularization term >0</span>
<span class="sd"> rank : int, optional. Default is None. (>0)</span>
<span class="sd"> Nonnegative rank of the OT plan. If None, min(ns, nt) is considered.</span>
<span class="sd"> alpha : int, optional. Default is 1e-10. (>0 and <1/r)</span>
<span class="sd"> Lower bound for the weight vector g.</span>
<span class="sd"> rescale_cost : bool, optional. Default is True</span>
<span class="sd"> Rescale the low rank factorization of the sqeuclidean cost matrix</span>
<span class="sd"> init : str, optional. Default is 'random'.</span>
<span class="sd"> Initialization strategy for the low rank couplings. 'random', 'deterministic' or 'kmeans'</span>
<span class="sd"> reg_init : float, optional. Default is 1e-1. (>0)</span>
<span class="sd"> Regularization term for a 'kmeans' init. If None, 1 is considered.</span>
<span class="sd"> seed_init : int, optional. Default is 49. (>0)</span>
<span class="sd"> Random state for a 'random' or 'kmeans' init strategy.</span>
<span class="sd"> gamma_init : str, optional. Default is "rescale".</span>
<span class="sd"> Initialization strategy for gamma. 'rescale', or 'theory'</span>
<span class="sd"> Gamma is a constant that scales the convergence criterion of the Mirror Descent</span>
<span class="sd"> optimization scheme used to compute the low-rank couplings (Q, R and g)</span>
<span class="sd"> numItermax : int, optional. Default is 2000.</span>
<span class="sd"> Max number of iterations for the Dykstra algorithm</span>
<span class="sd"> stopThr : float, optional. Default is 1e-7.</span>
<span class="sd"> Stop threshold on error (>0) in Dykstra</span>
<span class="sd"> warn : bool, optional</span>
<span class="sd"> if True, raises a warning if the algorithm doesn't convergence.</span>
<span class="sd"> log : bool, optional</span>
<span class="sd"> record log if True</span>
<span class="sd"> Returns</span>
<span class="sd"> ---------</span>
<span class="sd"> Q : array-like, shape (n_samples_a, r)</span>
<span class="sd"> First low-rank matrix decomposition of the OT plan</span>
<span class="sd"> R: array-like, shape (n_samples_b, r)</span>
<span class="sd"> Second low-rank matrix decomposition of the OT plan</span>
<span class="sd"> g : array-like, shape (r, )</span>
<span class="sd"> Weight vector for the low-rank decomposition of the OT</span>
<span class="sd"> log : dict (lazy_plan, value and value_linear)</span>
<span class="sd"> log dictionary return only if log==True in parameters</span>
<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> .. [65] Scetbon, M., Cuturi, M., & Peyré, G. (2021).</span>
<span class="sd"> "Low-rank Sinkhorn Factorization". In International Conference on Machine Learning.</span>
<span class="sd"> """</span>
<span class="c1"># POT backend</span>
<span class="n">nx</span> <span class="o">=</span> <span class="n">get_backend</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">)</span>
<span class="n">ns</span><span class="p">,</span> <span class="n">nt</span> <span class="o">=</span> <span class="n">X_s</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">X_t</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="c1"># Initialize weights a, b</span>
<span class="k">if</span> <span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">a</span> <span class="o">=</span> <span class="n">unif</span><span class="p">(</span><span class="n">ns</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_s</span><span class="p">)</span>
<span class="k">if</span> <span class="n">b</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">b</span> <span class="o">=</span> <span class="n">unif</span><span class="p">(</span><span class="n">nt</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">X_t</span><span class="p">)</span>
<span class="c1"># Compute rank (see Section 3.1, def 1)</span>
<span class="n">r</span> <span class="o">=</span> <span class="n">rank</span>
<span class="k">if</span> <span class="n">rank</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">r</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">ns</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">r</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">ns</span><span class="p">,</span> <span class="n">nt</span><span class="p">,</span> <span class="n">rank</span><span class="p">)</span>
<span class="k">if</span> <span class="n">r</span> <span class="o"><=</span> <span class="mi">0</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"The rank parameter cannot have a negative value"</span><span class="p">)</span>
<span class="c1"># Dykstra won't converge if 1/rank < alpha (see Section 3.2)</span>
<span class="k">if</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">r</span> <span class="o"><</span> <span class="n">alpha</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
<span class="s2">"alpha (</span><span class="si">{a}</span><span class="s2">) should be smaller than 1/rank (</span><span class="si">{r}</span><span class="s2">) for the Dykstra algorithm to converge."</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
<span class="n">a</span><span class="o">=</span><span class="n">alpha</span><span class="p">,</span> <span class="n">r</span><span class="o">=</span><span class="mi">1</span> <span class="o">/</span> <span class="n">rank</span>
<span class="p">)</span>
<span class="p">)</span>
<span class="c1"># Low rank decomposition of the sqeuclidean cost matrix</span>
<span class="n">M1</span><span class="p">,</span> <span class="n">M2</span> <span class="o">=</span> <span class="n">compute_lr_sqeuclidean_matrix</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">,</span> <span class="n">rescale_cost</span><span class="p">,</span> <span class="n">nx</span><span class="p">)</span>
<span class="c1"># Initialize the low rank matrices Q, R, g</span>
<span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">g</span> <span class="o">=</span> <span class="n">_init_lr_sinkhorn</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">r</span><span class="p">,</span> <span class="n">init</span><span class="p">,</span> <span class="n">reg_init</span><span class="p">,</span> <span class="n">seed_init</span><span class="p">,</span> <span class="n">nx</span><span class="o">=</span><span class="n">nx</span><span class="p">)</span>
<span class="c1"># Gamma initialization</span>
<span class="k">if</span> <span class="n">gamma_init</span> <span class="o">==</span> <span class="s2">"theory"</span><span class="p">:</span>
<span class="n">L</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span>
<span class="mi">3</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">/</span> <span class="p">(</span><span class="n">alpha</span><span class="o">**</span><span class="mi">4</span><span class="p">))</span> <span class="o">*</span> <span class="p">((</span><span class="n">nx</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">M1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">M2</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
<span class="o">+</span> <span class="p">(</span><span class="n">reg</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">/</span> <span class="p">(</span><span class="n">alpha</span><span class="o">**</span><span class="mi">3</span><span class="p">))</span> <span class="o">*</span> <span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">M1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">M2</span><span class="p">)))</span> <span class="o">**</span> <span class="mi">2</span>
<span class="p">)</span>
<span class="n">gamma</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">L</span><span class="p">)</span>
<span class="k">if</span> <span class="n">gamma_init</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">"rescale"</span><span class="p">,</span> <span class="s2">"theory"</span><span class="p">]:</span>
<span class="k">raise</span> <span class="p">(</span>
<span class="ne">NotImplementedError</span><span class="p">(</span><span class="s1">'Not implemented gamma_init="</span><span class="si">{}</span><span class="s1">"'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">gamma_init</span><span class="p">))</span>
<span class="p">)</span>
<span class="c1"># -------------------------- Low rank algorithm ------------------------------</span>
<span class="c1"># see "Section 3.3, Algorithm 3 LOT"</span>
<span class="k">for</span> <span class="n">ii</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
<span class="c1"># Compute C*R dot using the lr decomposition of C</span>
<span class="n">CR</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">M2</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">R</span><span class="p">)</span>
<span class="n">CR_</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">M1</span><span class="p">,</span> <span class="n">CR</span><span class="p">)</span>
<span class="n">diag_g</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">g</span><span class="p">)[</span><span class="kc">None</span><span class="p">,</span> <span class="p">:]</span>
<span class="n">CR_g</span> <span class="o">=</span> <span class="n">CR_</span> <span class="o">*</span> <span class="n">diag_g</span>
<span class="c1"># Compute C.T * Q using the lr decomposition of C</span>
<span class="n">CQ</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">M1</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">Q</span><span class="p">)</span>
<span class="n">CQ_</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">M2</span><span class="p">,</span> <span class="n">CQ</span><span class="p">)</span>
<span class="n">CQ_g</span> <span class="o">=</span> <span class="n">CQ_</span> <span class="o">*</span> <span class="n">diag_g</span>
<span class="c1"># Compute omega</span>
<span class="n">omega</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">Q</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">CR_</span><span class="p">))</span>
<span class="c1"># Rescale gamma at each iteration</span>
<span class="k">if</span> <span class="n">gamma_init</span> <span class="o">==</span> <span class="s2">"rescale"</span><span class="p">:</span>
<span class="n">norm_1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">CR_</span> <span class="o">*</span> <span class="n">diag_g</span> <span class="o">+</span> <span class="n">reg</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Q</span><span class="p">)))</span> <span class="o">**</span> <span class="mi">2</span>
<span class="n">norm_2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">CQ_</span> <span class="o">*</span> <span class="n">diag_g</span> <span class="o">+</span> <span class="n">reg</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">R</span><span class="p">)))</span> <span class="o">**</span> <span class="mi">2</span>
<span class="n">norm_3</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="o">-</span><span class="n">omega</span> <span class="o">*</span> <span class="n">diag_g</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span>
<span class="n">gamma</span> <span class="o">=</span> <span class="mi">10</span> <span class="o">/</span> <span class="nb">max</span><span class="p">(</span><span class="n">norm_1</span><span class="p">,</span> <span class="n">norm_2</span><span class="p">,</span> <span class="n">norm_3</span><span class="p">)</span>
<span class="n">eps1</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">gamma</span> <span class="o">*</span> <span class="n">CR_g</span> <span class="o">-</span> <span class="p">((</span><span class="n">gamma</span> <span class="o">*</span> <span class="n">reg</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Q</span><span class="p">))</span>
<span class="n">eps2</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">gamma</span> <span class="o">*</span> <span class="n">CQ_g</span> <span class="o">-</span> <span class="p">((</span><span class="n">gamma</span> <span class="o">*</span> <span class="n">reg</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">R</span><span class="p">))</span>
<span class="n">eps3</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">((</span><span class="n">gamma</span> <span class="o">*</span> <span class="n">omega</span> <span class="o">/</span> <span class="p">(</span><span class="n">g</span><span class="o">**</span><span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="p">(</span><span class="n">gamma</span> <span class="o">*</span> <span class="n">reg</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">g</span><span class="p">))</span>
<span class="c1"># LR Dykstra algorithm</span>
<span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">g</span> <span class="o">=</span> <span class="n">_LR_Dysktra</span><span class="p">(</span>
<span class="n">eps1</span><span class="p">,</span> <span class="n">eps2</span><span class="p">,</span> <span class="n">eps3</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">stopThr</span><span class="p">,</span> <span class="n">numItermax</span><span class="p">,</span> <span class="n">warn</span><span class="p">,</span> <span class="n">nx</span>
<span class="p">)</span>
<span class="n">Q</span> <span class="o">=</span> <span class="n">Q</span> <span class="o">+</span> <span class="mf">1e-16</span>
<span class="n">R</span> <span class="o">=</span> <span class="n">R</span> <span class="o">+</span> <span class="mf">1e-16</span>
<span class="n">g</span> <span class="o">=</span> <span class="n">g</span> <span class="o">+</span> <span class="mf">1e-16</span>
<span class="c1"># ----------------- Compute lazy_plan, value and value_linear ------------------</span>
<span class="c1"># see "Section 3.2: The Low-rank OT Problem" in the paper</span>
<span class="c1"># Compute lazy plan (using LazyTensor class)</span>
<span class="n">lazy_plan</span> <span class="o">=</span> <span class="n">get_lowrank_lazytensor</span><span class="p">(</span><span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">g</span><span class="p">)</span>
<span class="c1"># Compute value_linear (using trace formula)</span>
<span class="n">A</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">M1</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">Q</span><span class="p">)</span>
<span class="n">B</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">M2</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">R</span> <span class="o">*</span> <span class="n">diag_g</span><span class="p">)</span>
<span class="n">value_linear</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">A</span> <span class="o">*</span> <span class="n">B</span><span class="p">)</span>
<span class="c1"># Compute value with entropy reg (see "Section 3.2" in the paper)</span>
<span class="n">reg_Q</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">Q</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Q</span> <span class="o">+</span> <span class="mf">1e-16</span><span class="p">))</span> <span class="c1"># entropy for Q</span>
<span class="n">reg_g</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">g</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">g</span> <span class="o">+</span> <span class="mf">1e-16</span><span class="p">))</span> <span class="c1"># entropy for g</span>
<span class="n">reg_R</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">R</span> <span class="o">*</span> <span class="n">nx</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">R</span> <span class="o">+</span> <span class="mf">1e-16</span><span class="p">))</span> <span class="c1"># entropy for R</span>
<span class="n">value</span> <span class="o">=</span> <span class="n">value_linear</span> <span class="o">+</span> <span class="n">reg</span> <span class="o">*</span> <span class="p">(</span><span class="n">reg_Q</span> <span class="o">+</span> <span class="n">reg_g</span> <span class="o">+</span> <span class="n">reg_R</span><span class="p">)</span>
<span class="k">if</span> <span class="n">log</span><span class="p">:</span>
<span class="n">dict_log</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"value"</span><span class="p">]</span> <span class="o">=</span> <span class="n">value</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"value_linear"</span><span class="p">]</span> <span class="o">=</span> <span class="n">value_linear</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"lazy_plan"</span><span class="p">]</span> <span class="o">=</span> <span class="n">lazy_plan</span>
<span class="k">return</span> <span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">g</span><span class="p">,</span> <span class="n">dict_log</span>
<span class="k">return</span> <span class="n">Q</span><span class="p">,</span> <span class="n">R</span><span class="p">,</span> <span class="n">g</span></div>
<div class="viewcode-block" id="kernel_nystroem">
<a class="viewcode-back" href="../../gen_modules/ot.lowrank.html#ot.kernel_nystroem">[docs]</a>
<span class="k">def</span><span class="w"> </span><span class="nf">kernel_nystroem</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">,</span> <span class="n">anchors</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">random_state</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="w"> </span><span class="sa">r</span><span class="sd">"""</span>
<span class="sd"> Compute left and right factors corresponding to the Nystroem method on the Gaussian kernel :math:`K(x^s_i, x^t_j) = \exp(-\|x^s_i-x^t_j\|^2/2\sigma^2)`.</span>
<span class="sd"> The Nystroem approximation is computed by sampling :math:`\min(n, \lceil(c / 2))\rceil)` components in each distribution,</span>
<span class="sd"> where :math:`n` is the number of samples in the distribution and :math:`c` the total number of anchor points.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> X_s : array-like, shape (n_samples_a, dim)</span>
<span class="sd"> samples in the source domain</span>
<span class="sd"> X_t : array-like, shape (n_samples_b, dim)</span>
<span class="sd"> samples in the target domain</span>
<span class="sd"> anchors : int, optional</span>
<span class="sd"> The total number of anchors sampled for the Nystroem approximation (anchors/2 in each distribution), default 50.</span>
<span class="sd"> sigma : float, optional</span>
<span class="sd"> The standard deviation parameter for the Gaussian kernel.</span>
<span class="sd"> random_state : int, optional</span>
<span class="sd"> The random state for sampling the components in each distribution.</span>
<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> left_factor : array-like, shape (n_samples_a, dim_r)</span>
<span class="sd"> Left factor of Nystroem</span>
<span class="sd"> right_factor : array-like, shape (n_samples_b, dim_r)</span>
<span class="sd"> Right factor of Nystroem</span>
<span class="sd"> """</span>
<span class="n">nx</span> <span class="o">=</span> <span class="n">get_backend</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">X_t</span><span class="p">)</span>
<span class="k">if</span> <span class="n">random_state</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">nx</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="n">random_state</span><span class="p">)</span>
<span class="n">n</span><span class="p">,</span> <span class="n">m</span> <span class="o">=</span> <span class="n">X_s</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">X_t</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">anchors</span><span class="p">,</span> <span class="nb">int</span><span class="p">)</span> <span class="ow">or</span> <span class="n">anchors</span> <span class="o"><</span> <span class="mi">2</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"anchors must be an integer >= 2"</span><span class="p">)</span>
<span class="n">n_components_source</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">anchors</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
<span class="n">n_components_target</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">m</span><span class="p">,</span> <span class="n">anchors</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
<span class="c1"># draw n_components/2 points in each distribution</span>
<span class="n">inds_source</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">randperm</span><span class="p">(</span><span class="n">n</span><span class="p">)</span> <span class="c1"># sample n_components_source uniformly</span>
<span class="n">basis_source</span> <span class="o">=</span> <span class="n">X_s</span><span class="p">[</span><span class="n">inds_source</span><span class="p">[:</span><span class="n">n_components_source</span><span class="p">]]</span>
<span class="n">inds_target</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">randperm</span><span class="p">(</span><span class="n">m</span><span class="p">)</span>
<span class="n">basis_target</span> <span class="o">=</span> <span class="n">X_t</span><span class="p">[</span><span class="n">inds_target</span><span class="p">[:</span><span class="n">n_components_target</span><span class="p">]]</span>
<span class="n">basis</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">basis_source</span><span class="p">,</span> <span class="n">basis_target</span><span class="p">))</span>
<span class="n">Mzz</span> <span class="o">=</span> <span class="n">dist</span><span class="p">(</span><span class="n">basis</span><span class="p">,</span> <span class="n">metric</span><span class="o">=</span><span class="s2">"sqeuclidean"</span><span class="p">)</span> <span class="c1"># compute \|z_i - z_j\|_2^2</span>
<span class="n">basis_kernel</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">Mzz</span> <span class="o">/</span> <span class="p">(</span><span class="mf">2.0</span> <span class="o">*</span> <span class="n">sigma</span><span class="o">**</span><span class="mi">2</span><span class="p">))</span>
<span class="n">normalization</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">basis_kernel</span><span class="p">,</span> <span class="n">hermitian</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="n">Mxz</span> <span class="o">=</span> <span class="n">dist</span><span class="p">(</span><span class="n">X_s</span><span class="p">,</span> <span class="n">basis</span><span class="p">,</span> <span class="n">metric</span><span class="o">=</span><span class="s2">"sqeuclidean"</span><span class="p">)</span>
<span class="n">Myz</span> <span class="o">=</span> <span class="n">dist</span><span class="p">(</span><span class="n">X_t</span><span class="p">,</span> <span class="n">basis</span><span class="p">,</span> <span class="n">metric</span><span class="o">=</span><span class="s2">"sqeuclidean"</span><span class="p">)</span>
<span class="n">left_factor</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">Mxz</span> <span class="o">/</span> <span class="p">(</span><span class="mf">2.0</span> <span class="o">*</span> <span class="n">sigma</span><span class="o">**</span><span class="mi">2</span><span class="p">))</span> <span class="o">@</span> <span class="n">normalization</span>
<span class="n">right_factor</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">Myz</span> <span class="o">/</span> <span class="p">(</span><span class="mf">2.0</span> <span class="o">*</span> <span class="n">sigma</span><span class="o">**</span><span class="mi">2</span><span class="p">))</span>
<span class="k">return</span> <span class="n">left_factor</span><span class="p">,</span> <span class="n">right_factor</span> <span class="c1"># left_factor @ right_factor.T approx K</span></div>
<div class="viewcode-block" id="sinkhorn_low_rank_kernel">
<a class="viewcode-back" href="../../gen_modules/ot.lowrank.html#ot.sinkhorn_low_rank_kernel">[docs]</a>
<span class="k">def</span><span class="w"> </span><span class="nf">sinkhorn_low_rank_kernel</span><span class="p">(</span>
<span class="n">K1</span><span class="p">,</span> <span class="c1"># left factor</span>
<span class="n">K2</span><span class="p">,</span> <span class="c1"># right factor</span>
<span class="n">a</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">b</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="n">numItermax</span><span class="o">=</span><span class="mi">1000</span><span class="p">,</span>
<span class="n">stopThr</span><span class="o">=</span><span class="mf">1e-9</span><span class="p">,</span>
<span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
<span class="n">log</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
<span class="n">warn</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
<span class="n">warmstart</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
<span class="p">):</span>
<span class="w"> </span><span class="sa">r</span><span class="sd">"""</span>
<span class="sd"> Compute the Sinkhorn algorithm for a kernel :math:`\mathbf{K}` that can be written as a low rank factorization :math:`\mathbf{K} = \mathbf{K}_1 \mathbf{K}_2^\top`.</span>
<span class="sd"> Does not implement multiple targets.</span>
<span class="sd"> Precisely :</span>
<span class="sd"> - :math:`\mathbf{K}_1, \mathbf{K}_2` are the (`dim_a`, `dim_r`), (`dim_b`, `dim_r`) kernel matrices</span>
<span class="sd"> - :math:`\Omega` is the entropic regularization term</span>
<span class="sd"> :math:`\Omega(\gamma)=\sum_{i,j} \gamma_{i,j}\log(\gamma_{i,j})`</span>
<span class="sd"> - :math:`\mathbf{a}` and :math:`\mathbf{b}` are source and target</span>
<span class="sd"> weights (histograms, both sum to 1)</span>
<span class="sd"> The algorithm used for solving the problem is the Sinkhorn-Knopp</span>
<span class="sd"> matrix scaling algorithm as proposed in :ref:`[2] <references-sinkhorn-knopp>`</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> K_1 : array-like, shape (n_samples_a, dim_r)</span>
<span class="sd"> Left factor</span>
<span class="sd"> K_2 : array-like, shape (n_samples_b, dim_r)</span>
<span class="sd"> Right factor</span>
<span class="sd"> a : array-like, shape (n_samples_a,)</span>
<span class="sd"> samples weights in the source domain</span>
<span class="sd"> b : array-like, shape (n_samples_b,)</span>
<span class="sd"> samples in the target domain</span>
<span class="sd"> numItermax : int, optional</span>
<span class="sd"> Max number of iterations</span>
<span class="sd"> stopThr : float, optional</span>
<span class="sd"> Stop threshold on error (>0)</span>
<span class="sd"> verbose : bool, optional</span>
<span class="sd"> Print information along iterations</span>
<span class="sd"> log : bool, optional</span>
<span class="sd"> record log if True</span>
<span class="sd"> warn : bool, optional</span>
<span class="sd"> if True, raises a warning if the algorithm doesn't convergence.</span>
<span class="sd"> warmstart: tuple of arrays, shape (n_samples_a, n_samples_b), optional</span>
<span class="sd"> Initialization of dual potentials. If provided, the dual potentials should be given</span>
<span class="sd"> (that is the logarithm of the u,v sinkhorn scaling vectors)</span>
<span class="sd"> Returns</span>
<span class="sd"> ---------</span>
<span class="sd"> u : array-like, shape (n_samples_a, )</span>
<span class="sd"> Left dual variable</span>
<span class="sd"> v: array-like, shape (n_samples_b, )</span>
<span class="sd"> Right dual variable</span>
<span class="sd"> log : dict (lazy_plan)</span>
<span class="sd"> log dictionary return only if log==True in parameters</span>
<span class="sd"> """</span>
<span class="n">nx</span> <span class="o">=</span> <span class="n">get_backend</span><span class="p">(</span><span class="n">K1</span><span class="p">,</span> <span class="n">K2</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">)</span>
<span class="k">if</span> <span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">a</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">full</span><span class="p">((</span><span class="n">K1</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],),</span> <span class="mf">1.0</span> <span class="o">/</span> <span class="n">K1</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">type_as</span><span class="o">=</span><span class="n">K1</span><span class="p">)</span>
<span class="k">if</span> <span class="n">b</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">b</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">full</span><span class="p">((</span><span class="n">K2</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],),</span> <span class="mf">1.0</span> <span class="o">/</span> <span class="n">K2</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">type_as</span><span class="o">=</span><span class="n">K2</span><span class="p">)</span>
<span class="c1"># init data</span>
<span class="n">dim_a</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">a</span><span class="p">)</span>
<span class="n">dim_b</span> <span class="o">=</span> <span class="n">b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
<span class="k">if</span> <span class="n">log</span><span class="p">:</span>
<span class="n">dict_log</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"err"</span><span class="p">:</span> <span class="p">[]}</span>
<span class="c1"># we assume that no distances are null except those of the diagonal of</span>
<span class="c1"># distances</span>
<span class="k">if</span> <span class="n">warmstart</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">u</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">dim_a</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">K1</span><span class="p">)</span> <span class="o">/</span> <span class="n">dim_a</span>
<span class="n">v</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">dim_b</span><span class="p">,</span> <span class="n">type_as</span><span class="o">=</span><span class="n">K2</span><span class="p">)</span> <span class="o">/</span> <span class="n">dim_b</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">u</span><span class="p">,</span> <span class="n">v</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">warmstart</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="n">nx</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">warmstart</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
<span class="n">err</span> <span class="o">=</span> <span class="mi">1</span>
<span class="k">for</span> <span class="n">ii</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">numItermax</span><span class="p">):</span>
<span class="n">uprev</span> <span class="o">=</span> <span class="n">u</span>
<span class="n">vprev</span> <span class="o">=</span> <span class="n">v</span>
<span class="n">KtransposeU</span> <span class="o">=</span> <span class="n">K2</span> <span class="o">@</span> <span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="n">K1</span><span class="p">)</span> <span class="o">@</span> <span class="n">u</span><span class="p">)</span>
<span class="n">v</span> <span class="o">=</span> <span class="n">b</span> <span class="o">/</span> <span class="n">KtransposeU</span>
<span class="n">KV</span> <span class="o">=</span> <span class="n">K1</span> <span class="o">@</span> <span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="n">K2</span><span class="p">)</span> <span class="o">@</span> <span class="n">v</span><span class="p">)</span>
<span class="n">u</span> <span class="o">=</span> <span class="n">a</span> <span class="o">/</span> <span class="n">KV</span>
<span class="k">if</span> <span class="p">(</span>
<span class="n">nx</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">KtransposeU</span> <span class="o">==</span> <span class="mi">0</span><span class="p">)</span>
<span class="ow">or</span> <span class="n">nx</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">u</span><span class="p">))</span>
<span class="ow">or</span> <span class="n">nx</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">v</span><span class="p">))</span>
<span class="ow">or</span> <span class="n">nx</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">isinf</span><span class="p">(</span><span class="n">u</span><span class="p">))</span>
<span class="ow">or</span> <span class="n">nx</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">isinf</span><span class="p">(</span><span class="n">v</span><span class="p">))</span>
<span class="p">):</span>
<span class="c1"># we have reached the machine precision</span>
<span class="c1"># come back to previous solution and quit loop</span>
<span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Warning: numerical errors at iteration </span><span class="si">%d</span><span class="s2">"</span> <span class="o">%</span> <span class="n">ii</span><span class="p">)</span>
<span class="n">u</span> <span class="o">=</span> <span class="n">uprev</span>
<span class="n">v</span> <span class="o">=</span> <span class="n">vprev</span>
<span class="k">break</span>
<span class="k">if</span> <span class="n">ii</span> <span class="o">%</span> <span class="mi">10</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="c1"># we can speed up the process by checking for the error only all</span>
<span class="c1"># the 10th iterations</span>
<span class="n">tmp2</span> <span class="o">=</span> <span class="p">(</span>
<span class="n">v</span> <span class="o">*</span> <span class="p">(</span><span class="n">K2</span> <span class="o">@</span> <span class="p">(</span><span class="n">nx</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="n">K1</span><span class="p">)</span> <span class="o">@</span> <span class="n">u</span><span class="p">))</span>
<span class="p">)</span> <span class="c1"># same as nx.einsum("ik, ir, jr, jk->jk", u, K1, K2, v) and nx.einsum("i, ir, jr, j->j", u, K1, K2, v) in the scalar case</span>
<span class="n">err</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">norm</span><span class="p">(</span><span class="n">tmp2</span> <span class="o">-</span> <span class="n">b</span><span class="p">)</span> <span class="c1"># violation of marginal</span>
<span class="k">if</span> <span class="n">log</span><span class="p">:</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"err"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">err</span><span class="p">)</span>
<span class="k">if</span> <span class="n">err</span> <span class="o"><</span> <span class="n">stopThr</span><span class="p">:</span>
<span class="k">break</span>
<span class="k">if</span> <span class="n">verbose</span><span class="p">:</span>
<span class="k">if</span> <span class="n">ii</span> <span class="o">%</span> <span class="mi">200</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"</span><span class="si">{:5s}</span><span class="s2">|</span><span class="si">{:12s}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s2">"It."</span><span class="p">,</span> <span class="s2">"Err"</span><span class="p">)</span> <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span> <span class="o">+</span> <span class="s2">"-"</span> <span class="o">*</span> <span class="mi">19</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"</span><span class="si">{:5d}</span><span class="s2">|</span><span class="si">{:8e}</span><span class="s2">|"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">ii</span><span class="p">,</span> <span class="n">err</span><span class="p">))</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">if</span> <span class="n">warn</span><span class="p">:</span>
<span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
<span class="s2">"Sinkhorn did not converge. You might want to "</span>
<span class="s2">"increase the number of iterations `numItermax` "</span>
<span class="s2">"or the regularization parameter `reg`."</span>
<span class="p">)</span>
<span class="k">if</span> <span class="n">log</span><span class="p">:</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"niter"</span><span class="p">]</span> <span class="o">=</span> <span class="n">ii</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"u"</span><span class="p">]</span> <span class="o">=</span> <span class="n">u</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"v"</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
<span class="n">dict_log</span><span class="p">[</span><span class="s2">"lazy_plan"</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_lowrank_lazytensor</span><span class="p">(</span>
<span class="n">u</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span> <span class="o">*</span> <span class="n">K1</span><span class="p">,</span> <span class="n">v</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span> <span class="o">*</span> <span class="n">K2</span>
<span class="p">)</span>
<span class="k">return</span> <span class="n">u</span><span class="p">,</span> <span class="n">v</span><span class="p">,</span> <span class="n">dict_log</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">return</span> <span class="n">u</span><span class="p">,</span> <span class="n">v</span></div>
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