Need to add a dependency from biojava-alignment. This could be avoided importing in biojava core the alignment data structures present in biojava-alignment.

paolopavan · paolopavan · commit 38a811a8d8cb · 2015-07-23T14:31:10.000+02:00
diff --git a/biojava-core/pom.xml b/biojava-core/pom.xml
@@ -49,7 +49,12 @@
   		<dependency>
     		<groupId>org.apache.logging.log4j</groupId>
     		<artifactId>log4j-core</artifactId>
-  		</dependency>			
+  		</dependency>
+	 <dependency>
+	  <groupId>${project.groupId}</groupId>
+	  <artifactId>biojava-alignment</artifactId>
+	  <version>${project.version}</version>
+	 </dependency>
 	</dependencies>
 	<properties>
 		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
