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update single-animal guide: add box 2 tensorflow pose config yaml
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docs/images/box2-single.png

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docs/standardDeepLabCut_UserGuide.md

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@@ -700,7 +700,7 @@ are stored in the subdirectory *train* under the respective iteration directory.
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If the user wishes to restart the training at a specific checkpoint they can specify the
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full path of the checkpoint to the variable ``init_weights`` in the **pose_cfg.yaml**
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file under the *train* subdirectory (see Box 2).
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file under the *train* subdirectory (see {ref}`Box 2 <pose-cfg-box2>`).
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**Tip**: It is recommended to train the networks for thousands of iterations
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until the loss plateaus (typically around **500,000**) if you use batch size 1. If you
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``maxiters``. I.e. we suggest saving every 10K-15K iterations, and only training until
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50K-100K iterations. We recommend you look closely at the loss to not overfit on your
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data. This will reduce your training time.
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```{figure} images/box2-single.png
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---
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name: config-box2
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alt: Box 2 - Single Animal TensorFlow Configuration File Glossary
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align: center
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---
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Single-animal TensorFlow configuration file glossary
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```
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````
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##### API Docs
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Now you can run `create_training_dataset`, then `train_network`, etc. If your original labels were adjusted at all,
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start from fresh weights (which is generally recommended), otherwise consider using your already trained network
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weights (see Box 2).
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weights (see {ref}`Box 2 <pose-cfg-box2>`).
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If after training the network generalizes well to the data, proceed to analyze new videos. Otherwise, consider labeling
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more data.

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