fix imports

martin-raden · martin-raden · commit 9372d66f0bad · 2020-03-02T11:01:36.000+01:00
diff --git a/python/copomus/__init__.py b/python/copomus/__init__.py
@@ -1 +1 @@
-__all__ = ['mutation', 'indexing', 'IntaRNA', 'measures.py']
+__all__ = ['mutation', 'indexing', 'IntaRNA', 'measures']
diff --git a/python/copomus/candidate_filters.py b/python/copomus/candidate_filters.py
@@ -2,7 +2,7 @@
 # Author: Fabio Gutmann <https://github.com/fabio-gut>
 
 from typing import Tuple, List
-from utils.indexing import idx_to_array_index
+from copomus.indexing import idx_to_array_index
 
 
 def _filter_bp_type(bps: List[Tuple[int, int]], q: str, t: str, qidxpos0: int, tidxpos0: int, bp_type='') -> \
diff --git a/python/copomus/candidate_selectors.py b/python/copomus/candidate_selectors.py
@@ -3,8 +3,8 @@
 
 import sys
 from typing import List, Tuple
-from utils.IntaRNA import IntaRNA
-from utils.indexing import idx_to_array_index as idx_aidx
+from copomus.IntaRNA import IntaRNA
+from copomus.indexing import idx_to_array_index as idx_aidx
 
 
 def get_mfe_bps(query: str, target: str, qidxpos0: int, tidxpos0: int, param_file: str, threads: int, **kwargs) -> \
diff --git a/python/copomus/measures.py b/python/copomus/measures.py
@@ -3,8 +3,8 @@
 
 import os
 from tempfile import gettempdir
-from utils.mutation import Mutation
-from utils.indexing import idx_to_array_index
+from copomus.mutation import Mutation
+from copomus.indexing import idx_to_array_index
 
 
 class Measure:
diff --git a/python/copomus/mutation.py b/python/copomus/mutation.py
@@ -3,7 +3,7 @@
 
 from dataclasses import dataclass, field
 from typing import List
-from utils.indexing import idx_to_array_index
+from copomus.indexing import idx_to_array_index
 
 
 @dataclass()
diff --git a/python/copomus/mutation_generators.py b/python/copomus/mutation_generators.py
@@ -2,9 +2,9 @@
 # Author: Fabio Gutmann <https://github.com/fabio-gut>
 
 from copy import deepcopy
-from utils.indexing import idx_to_array_index
-from utils.measures import get_measure
-from utils.mutation import Mutation
+from copomus.indexing import idx_to_array_index
+from copomus.measures import get_measure
+from copomus.mutation import Mutation
 from typing import List, Tuple
 
 

Original file line number	Diff line number	Diff line change
`@@ -1 +1 @@`
`1`		`-__all__ = ['mutation', 'indexing', 'IntaRNA', 'measures.py']`
	`1`	`+__all__ = ['mutation', 'indexing', 'IntaRNA', 'measures']`