name: C/C++ CI

on:

push:

branches: [ master ]

pull_request:

branches: [ master ]

defaults:

run:

shell: bash -el {0}

jobs:

build:

runs-on: ubuntu-latest

steps:

- name: Check out sources from github

uses: actions/checkout@v2

- name: Setup conda environment

uses: conda-incubator/setup-miniconda@v2

with:

miniconda-version: "latest"

environment-file: conda-build-env.yml

activate-environment: conda-build-env

- name: Build and test IntaRNA

run: |

##### start IntaRNA build #####

pwd

# generate autotools's files

bash autotools-init.sh

# run configure (without boost checks)

ENVPREFIX=`conda info --base`/envs/conda-build-env

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ENVPREFIX/lib

./configure \

--prefix=$HOME/IntaRNA \

--with-vrna=$ENVPREFIX \

--with-boost=$ENVPREFIX \

--with-boost-libdir=$ENVPREFIX/lib \

--with-zlib=$ENVPREFIX

# compile documentation

# - make doxygen-doc

# compile, test and install IntaRNA

make -j 2 && make install

make tests -j 2

##### check IntaRNA build #####

# run installed IntaRNA with help output

$HOME/IntaRNA/bin/IntaRNA -h