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# Copyright 2023 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from unittest import mock
from google.cloud import bigquery
import pytest
import sklearn.compose as sklearn_compose # type: ignore
import sklearn.preprocessing as sklearn_preprocessing # type: ignore
from bigframes.ml import compose, preprocessing
from bigframes.ml.compose import ColumnTransformer, SQLScalarColumnTransformer
from bigframes.ml.core import BqmlModel
import bigframes.pandas as bpd
def test_columntransformer_init_expectedtransforms():
onehot_transformer = preprocessing.OneHotEncoder()
standard_scaler_transformer = preprocessing.StandardScaler()
max_abs_scaler_transformer = preprocessing.MaxAbsScaler()
min_max_scaler_transformer = preprocessing.MinMaxScaler()
k_bins_discretizer_transformer = preprocessing.KBinsDiscretizer(strategy="uniform")
label_transformer = preprocessing.LabelEncoder()
column_transformer = compose.ColumnTransformer(
[
("onehot", onehot_transformer, "species"),
(
"standard_scale",
standard_scaler_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
(
"max_abs_scale",
max_abs_scaler_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
(
"min_max_scale",
min_max_scaler_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
(
"k_bins_discretizer",
k_bins_discretizer_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
("label", label_transformer, "species"),
]
)
assert column_transformer.transformers_ == [
("onehot", onehot_transformer, "species"),
("standard_scale", standard_scaler_transformer, "culmen_length_mm"),
("standard_scale", standard_scaler_transformer, "flipper_length_mm"),
("max_abs_scale", max_abs_scaler_transformer, "culmen_length_mm"),
("max_abs_scale", max_abs_scaler_transformer, "flipper_length_mm"),
("min_max_scale", min_max_scaler_transformer, "culmen_length_mm"),
("min_max_scale", min_max_scaler_transformer, "flipper_length_mm"),
("k_bins_discretizer", k_bins_discretizer_transformer, "culmen_length_mm"),
("k_bins_discretizer", k_bins_discretizer_transformer, "flipper_length_mm"),
("label", label_transformer, "species"),
]
def test_columntransformer_repr():
column_transformer = compose.ColumnTransformer(
[
(
"onehot",
preprocessing.OneHotEncoder(),
"species",
),
(
"standard_scale",
preprocessing.StandardScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"max_abs_scale",
preprocessing.MaxAbsScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"min_max_scale",
preprocessing.MinMaxScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"k_bins_discretizer",
preprocessing.KBinsDiscretizer(strategy="uniform"),
["culmen_length_mm", "flipper_length_mm"],
),
]
)
assert (
column_transformer.__repr__()
== """ColumnTransformer(transformers=[('onehot', OneHotEncoder(), 'species'),
('standard_scale', StandardScaler(),
['culmen_length_mm', 'flipper_length_mm']),
('max_abs_scale', MaxAbsScaler(),
['culmen_length_mm', 'flipper_length_mm']),
('min_max_scale', MinMaxScaler(),
['culmen_length_mm', 'flipper_length_mm']),
('k_bins_discretizer',
KBinsDiscretizer(strategy='uniform'),
['culmen_length_mm', 'flipper_length_mm'])])"""
)
def test_columntransformer_repr_matches_sklearn():
bf_column_transformer = compose.ColumnTransformer(
[
(
"onehot",
preprocessing.OneHotEncoder(),
"species",
),
(
"standard_scale",
preprocessing.StandardScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"max_abs_scale",
preprocessing.MaxAbsScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"min_max_scale",
preprocessing.MinMaxScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"k_bins_discretizer",
preprocessing.KBinsDiscretizer(strategy="uniform"),
["culmen_length_mm", "flipper_length_mm"],
),
]
)
sk_column_transformer = sklearn_compose.ColumnTransformer(
[
(
"onehot",
sklearn_preprocessing.OneHotEncoder(),
"species",
),
(
"standard_scale",
sklearn_preprocessing.StandardScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"max_abs_scale",
sklearn_preprocessing.MaxAbsScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"min_max_scale",
sklearn_preprocessing.MinMaxScaler(),
["culmen_length_mm", "flipper_length_mm"],
),
(
"k_bins_discretizer",
sklearn_preprocessing.KBinsDiscretizer(strategy="uniform"),
["culmen_length_mm", "flipper_length_mm"],
),
]
)
assert bf_column_transformer.__repr__() == sk_column_transformer.__repr__()
@pytest.fixture(scope="session")
def mock_X():
mock_df = mock.create_autospec(spec=bpd.DataFrame)
return mock_df
def test_columntransformer_init_with_sqltransformers():
ident_transformer = SQLScalarColumnTransformer("{0}", target_column="ident_{0}")
len1_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN -2 ELSE LENGTH({0}) END", target_column="len1_{0}"
)
len2_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN 99 ELSE LENGTH({0}) END", target_column="len2_{0}"
)
label_transformer = preprocessing.LabelEncoder()
column_transformer = compose.ColumnTransformer(
[
(
"ident_trafo",
ident_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
("len1_trafo", len1_transformer, ["species"]),
("len2_trafo", len2_transformer, ["species"]),
("label", label_transformer, "species"),
]
)
assert column_transformer.transformers_ == [
("ident_trafo", ident_transformer, "culmen_length_mm"),
("ident_trafo", ident_transformer, "flipper_length_mm"),
("len1_trafo", len1_transformer, "species"),
("len2_trafo", len2_transformer, "species"),
("label", label_transformer, "species"),
]
def test_columntransformer_repr_sqltransformers():
ident_transformer = SQLScalarColumnTransformer("{0}", target_column="ident_{0}")
len1_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN -2 ELSE LENGTH({0}) END", target_column="len1_{0}"
)
len2_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN 99 ELSE LENGTH({0}) END", target_column="len2_{0}"
)
label_transformer = preprocessing.LabelEncoder()
column_transformer = compose.ColumnTransformer(
[
(
"ident_trafo",
ident_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
("len1_trafo", len1_transformer, ["species"]),
("len2_trafo", len2_transformer, ["species"]),
("label", label_transformer, "species"),
]
)
expected = """ColumnTransformer(transformers=[('ident_trafo',
SQLScalarColumnTransformer(sql='{0}', target_column='ident_{0}'),
['culmen_length_mm', 'flipper_length_mm']),
('len1_trafo',
SQLScalarColumnTransformer(sql='CASE WHEN {0} IS NULL THEN -2 ELSE LENGTH({0}) END', target_column='len1_{0}'),
['species']),
('len2_trafo',
SQLScalarColumnTransformer(sql='CASE WHEN {0} IS NULL THEN 99 ELSE LENGTH({0}) END', target_column='len2_{0}'),
['species']),
('label', LabelEncoder(), 'species')])"""
actual = column_transformer.__repr__()
assert expected == actual
def test_customtransformer_compile_sql(mock_X):
ident_trafo = SQLScalarColumnTransformer("{0}", target_column="ident_{0}")
sqls = ident_trafo._compile_to_sql(X=mock_X, columns=["col1", "col2"])
assert sqls == [
"`col1` AS `ident_col1`",
"`col2` AS `ident_col2`",
]
len1_trafo = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN -5 ELSE LENGTH({0}) END", target_column="len1_{0}"
)
sqls = len1_trafo._compile_to_sql(X=mock_X, columns=["col1", "col2"])
assert sqls == [
"CASE WHEN `col1` IS NULL THEN -5 ELSE LENGTH(`col1`) END AS `len1_col1`",
"CASE WHEN `col2` IS NULL THEN -5 ELSE LENGTH(`col2`) END AS `len1_col2`",
]
len2_trafo = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN 99 ELSE LENGTH({0}) END", target_column="len2_{0}"
)
sqls = len2_trafo._compile_to_sql(X=mock_X, columns=["col1", "col2"])
assert sqls == [
"CASE WHEN `col1` IS NULL THEN 99 ELSE LENGTH(`col1`) END AS `len2_col1`",
"CASE WHEN `col2` IS NULL THEN 99 ELSE LENGTH(`col2`) END AS `len2_col2`",
]
def create_bq_model_mock(mocker, transform_columns, feature_columns=None):
properties = {"transformColumns": transform_columns}
mock_bq_model = bigquery.Model("model_project.model_dataset.model_id")
type(mock_bq_model)._properties = mock.PropertyMock(return_value=properties)
if feature_columns:
result = [
bigquery.standard_sql.StandardSqlField(col, None) for col in feature_columns
]
mocker.patch(
"google.cloud.bigquery.model.Model.feature_columns",
new_callable=mock.PropertyMock(return_value=result),
)
return mock_bq_model
@pytest.fixture
def bq_model_good(mocker):
return create_bq_model_mock(
mocker,
[
{
"name": "ident_culmen_length_mm",
"type": {"typeKind": "INT64"},
"transformSql": "culmen_length_mm /*CT.IDENT()*/",
},
{
"name": "ident_flipper_length_mm",
"type": {"typeKind": "INT64"},
"transformSql": "flipper_length_mm /*CT.IDENT()*/",
},
{
"name": "len1_species",
"type": {"typeKind": "INT64"},
"transformSql": "CASE WHEN species IS NULL THEN -5 ELSE LENGTH(species) END /*CT.LEN1()*/",
},
{
"name": "len2_species",
"type": {"typeKind": "INT64"},
"transformSql": "CASE WHEN species IS NULL THEN 99 ELSE LENGTH(species) END /*CT.LEN2([99])*/",
},
{
"name": "labelencoded_county",
"type": {"typeKind": "INT64"},
"transformSql": "ML.LABEL_ENCODER(county, 1000000, 0) OVER()",
},
{
"name": "labelencoded_species",
"type": {"typeKind": "INT64"},
"transformSql": "ML.LABEL_ENCODER(species, 1000000, 0) OVER()",
},
],
)
@pytest.fixture
def bq_model_merge(mocker):
return create_bq_model_mock(
mocker,
[
{
"name": "labelencoded_county",
"type": {"typeKind": "INT64"},
"transformSql": "ML.LABEL_ENCODER(county, 1000000, 0) OVER()",
},
{
"name": "labelencoded_species",
"type": {"typeKind": "INT64"},
"transformSql": "ML.LABEL_ENCODER(species, 1000000, 0) OVER()",
},
],
["county", "species"],
)
@pytest.fixture
def bq_model_no_merge(mocker):
return create_bq_model_mock(
mocker,
[
{
"name": "ident_culmen_length_mm",
"type": {"typeKind": "INT64"},
"transformSql": "culmen_length_mm /*CT.IDENT()*/",
}
],
["culmen_length_mm"],
)
@pytest.fixture
def bq_model_unknown_ML(mocker):
return create_bq_model_mock(
mocker,
[
{
"name": "unknownml_culmen_length_mm",
"type": {"typeKind": "INT64"},
"transformSql": "ML.UNKNOWN(culmen_length_mm)",
},
{
"name": "labelencoded_county",
"type": {"typeKind": "INT64"},
"transformSql": "ML.LABEL_ENCODER(county, 1000000, 0) OVER()",
},
],
)
@pytest.fixture
def bq_model_flexnames(mocker):
return create_bq_model_mock(
mocker,
[
{
"name": "Flex Name culmen_length_mm",
"type": {"typeKind": "INT64"},
"transformSql": "culmen_length_mm",
},
{
"name": "transformed_Culmen Length MM",
"type": {"typeKind": "INT64"},
"transformSql": "`Culmen Length MM`*/",
},
# test workaround for bug in get_model
{
"name": "Flex Name flipper_length_mm",
"type": {"typeKind": "INT64"},
"transformSql": "flipper_length_mm AS `Flex Name flipper_length_mm`",
},
{
"name": "transformed_Flipper Length MM",
"type": {"typeKind": "INT64"},
"transformSql": "`Flipper Length MM` AS `transformed_Flipper Length MM`*/",
},
],
)
def test_columntransformer_extract_from_bq_model_good(bq_model_good):
col_trans = ColumnTransformer._extract_from_bq_model(bq_model_good)
assert len(col_trans.transformers) == 6
# normalize the representation for string comparing
col_trans.transformers.sort(key=lambda trafo: str(trafo))
actual = col_trans.__repr__()
expected = """ColumnTransformer(transformers=[('label_encoder',
LabelEncoder(max_categories=1000001,
min_frequency=0),
'county'),
('label_encoder',
LabelEncoder(max_categories=1000001,
min_frequency=0),
'species'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='CASE WHEN species IS NULL THEN -5 ELSE LENGTH(species) END /*CT.LEN1()*/', target_column='len1_species'),
'?len1_species'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='CASE WHEN species IS NULL THEN 99 ELSE LENGTH(species) END /*CT.LEN2([99])*/', target_column='len2_species'),
'?len2_species'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='culmen_length_mm /*CT.IDENT()*/', target_column='ident_culmen_length_mm'),
'?ident_culmen_length_mm'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='flipper_length_mm /*CT.IDENT()*/', target_column='ident_flipper_length_mm'),
'?ident_flipper_length_mm')])"""
assert expected == actual
def test_columntransformer_extract_from_bq_model_merge(bq_model_merge):
col_trans = ColumnTransformer._extract_from_bq_model(bq_model_merge)
assert isinstance(col_trans, ColumnTransformer)
merged_col_trans = col_trans._merge(bq_model_merge)
assert isinstance(merged_col_trans, preprocessing.LabelEncoder)
assert (
merged_col_trans.__repr__()
== """LabelEncoder(max_categories=1000001, min_frequency=0)"""
)
assert merged_col_trans._output_names == [
"labelencoded_county",
"labelencoded_species",
]
def test_columntransformer_extract_from_bq_model_no_merge(bq_model_no_merge):
col_trans = ColumnTransformer._extract_from_bq_model(bq_model_no_merge)
merged_col_trans = col_trans._merge(bq_model_no_merge)
assert isinstance(merged_col_trans, ColumnTransformer)
expected = """ColumnTransformer(transformers=[('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='culmen_length_mm /*CT.IDENT()*/', target_column='ident_culmen_length_mm'),
'?ident_culmen_length_mm')])"""
actual = merged_col_trans.__repr__()
assert expected == actual
def test_columntransformer_extract_from_bq_model_unknown_ML(bq_model_unknown_ML):
try:
_ = ColumnTransformer._extract_from_bq_model(bq_model_unknown_ML)
assert False
except NotImplementedError as e:
assert "Unsupported transformer type" in e.args[0]
def test_columntransformer_extract_output_names(bq_model_good):
class BQMLModel(BqmlModel):
def __init__(self, bq_model):
self._model = bq_model
col_trans = ColumnTransformer._extract_from_bq_model(bq_model_good)
col_trans._bqml_model = BQMLModel(bq_model_good)
col_trans._extract_output_names()
assert col_trans._output_names == [
"ident_culmen_length_mm",
"ident_flipper_length_mm",
"len1_species",
"len2_species",
"labelencoded_county",
"labelencoded_species",
]
def test_columntransformer_compile_to_sql(mock_X):
ident_transformer = SQLScalarColumnTransformer("{0}", target_column="ident_{0}")
len1_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN -2 ELSE LENGTH({0}) END", target_column="len1_{0}"
)
len2_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN 99 ELSE LENGTH({0}) END", target_column="len2_{0}"
)
label_transformer = preprocessing.LabelEncoder()
column_transformer = compose.ColumnTransformer(
[
(
"ident_trafo",
ident_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
("len1_trafo", len1_transformer, ["species"]),
("len2_trafo", len2_transformer, ["species"]),
("label", label_transformer, "species"),
]
)
sqls = column_transformer._compile_to_sql(mock_X)
assert sqls == [
"`culmen_length_mm` AS `ident_culmen_length_mm`",
"`flipper_length_mm` AS `ident_flipper_length_mm`",
"CASE WHEN `species` IS NULL THEN -2 ELSE LENGTH(`species`) END AS `len1_species`",
"CASE WHEN `species` IS NULL THEN 99 ELSE LENGTH(`species`) END AS `len2_species`",
"ML.LABEL_ENCODER(`species`, 1000000, 0) OVER() AS `labelencoded_species`",
]
def test_columntransformer_flexible_column_names(mock_X):
ident_transformer = SQLScalarColumnTransformer("{0}", target_column="ident {0}")
len1_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN -2 ELSE LENGTH({0}) END", target_column="len1_{0}"
)
len2_transformer = SQLScalarColumnTransformer(
"CASE WHEN {0} IS NULL THEN 99 ELSE LENGTH({0}) END", target_column="len2_{0}"
)
column_transformer = compose.ColumnTransformer(
[
(
"ident_trafo",
ident_transformer,
["culmen_length_mm", "flipper_length_mm"],
),
("len1_trafo", len1_transformer, ["species shortname"]),
("len2_trafo", len2_transformer, ["species longname"]),
]
)
sqls = column_transformer._compile_to_sql(mock_X)
assert sqls == [
"`culmen_length_mm` AS `ident culmen_length_mm`",
"`flipper_length_mm` AS `ident flipper_length_mm`",
"CASE WHEN `species shortname` IS NULL THEN -2 ELSE LENGTH(`species shortname`) END AS `len1_species shortname`",
"CASE WHEN `species longname` IS NULL THEN 99 ELSE LENGTH(`species longname`) END AS `len2_species longname`",
]
def test_columntransformer_extract_from_bq_model_flexnames(bq_model_flexnames):
col_trans = ColumnTransformer._extract_from_bq_model(bq_model_flexnames)
assert len(col_trans.transformers) == 4
# normalize the representation for string comparing
col_trans.transformers.sort(key=lambda trafo: str(trafo))
actual = col_trans.__repr__()
expected = """ColumnTransformer(transformers=[('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='`Culmen Length MM`*/', target_column='transformed_Culmen Length MM'),
'?transformed_Culmen Length MM'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='`Flipper Length MM` AS `transformed_Flipper Length MM`*/', target_column='transformed_Flipper Length MM'),
'?transformed_Flipper Length MM'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='culmen_length_mm', target_column='Flex Name culmen_length_mm'),
'?Flex Name culmen_length_mm'),
('sql_scalar_column_transformer',
SQLScalarColumnTransformer(sql='flipper_length_mm', target_column='Flex Name flipper_length_mm'),
'?Flex Name flipper_length_mm')])"""
assert expected == actual