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pre-commit install yields FileExistsError: [Errno 17] File exists: '/Users/vsts/.cache/pre-commit' #1192

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#1196
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pre-commit install yields FileExistsError: [Errno 17] File exists: '/Users/vsts/.cache/pre-commit'#1192
#1196
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bug
@raholler

Description

@raholler
raholler
opened on Oct 28, 2019

Problem: pre-commit install sometimes (not always) returns: FileExistsError: [Errno 17] File exists: '/Users/vsts/.cache/pre-commit'

OS: Occurs on Ubuntu and Mac, not tested for Windows.

Setup: For our cookiecutter project (https://github.com/hmgaudecker/econ-project-templates), we use pytests to test if the projected created fails our pre-commit hooks. We run the pytests on azure. The project is tested for multiple project configurations.

The tests are setup in the following way:

def _check_pre_commit(result):
    subprocess.Popen(
        "pre-commit install",
        stdout=subprocess.PIPE,
        stderr=subprocess.PIPE,
        shell=True,
        cwd=result.project,
    )
    c = subprocess.Popen(
        "pre-commit run --all-files",
        stdout=subprocess.PIPE,
        stderr=subprocess.PIPE,
        shell=True,
        cwd=result.project,
    )
    output, error = c.communicate()

    failure = re.search(r"Failed", str(output))
    if failure is not None:
        print(output)
        raise AssertionError("Some pre-commit failed.")
    # Not trivial to check for empty string if it might be binary stream
    assert len(error) == 0, "{}".format(str(error))
    assert re.search(
        r"(Passed|Failed)", str(output)
    ), "All files skipped by pre-commit."

were result.project is a temporary directory created.

Expected Output: Should fail if a pre-commit fails, and pass otherwise.

Output: The first of the pre-commit tests fails on a non-systematic basis, sometimes only on Linux, sometimes only on Mac OS, with the ouput:

An unexpected error has occurred: FileExistsError: [Errno 17] File exists: \'/Users/vsts/.cache/pre-commit\'\\nCheck the log at /Users/vsts/.cache/pre-commit/pre-commit.log\\n

The subsequent tests pass on each operating system.

UPDATE: full log contents:

019-10-21T13:00:08.5581220Z ##[section]Starting: Run pytests.
2019-10-21T13:00:08.5588010Z ==============================================================================
2019-10-21T13:00:08.5588250Z Task         : Bash
2019-10-21T13:00:08.5588370Z Description  : Run a Bash script on macOS, Linux, or Windows
2019-10-21T13:00:08.5588560Z Version      : 3.151.3
2019-10-21T13:00:08.5588680Z Author       : Microsoft Corporation
2019-10-21T13:00:08.5588880Z Help         : https://docs.microsoft.com/azure/devops/pipelines/tasks/utility/bash
2019-10-21T13:00:08.5589020Z ==============================================================================
2019-10-21T13:00:08.7618090Z Generating script.
2019-10-21T13:00:08.7670820Z ========================== Starting Command Output ===========================
2019-10-21T13:00:08.7702280Z [command]/bin/bash --noprofile --norc /Users/vsts/agent/2.158.0/work/_temp/066caadb-d509-4ebf-b933-863eae05fa12.sh
2019-10-21T13:00:23.3554080Z ============================= test session starts ==============================
2019-10-21T13:00:23.3561040Z platform darwin -- Python 3.7.4, pytest-5.2.1, py-1.8.0, pluggy-0.13.0
2019-10-21T13:00:23.3655960Z rootdir: /Users/vsts/agent/2.158.0/work/1/s
2019-10-21T13:00:23.3657390Z plugins: cookies-0.4.0, pythonpath-0.7.3, cov-2.8.1
2019-10-21T13:00:24.0809650Z collected 27 items
2019-10-21T13:00:24.0849280Z 
2019-10-21T13:01:45.0038630Z tests/test_cookie.py ........                                            [ 29%]
2019-10-21T13:03:21.6364550Z tests/test_pre_commit.py F.....                                          [ 51%]
2019-10-21T13:06:45.6358110Z tests/test_waf.py .......xxxxxx                                          [100%]
2019-10-21T13:06:45.6372100Z 
2019-10-21T13:06:45.6372800Z =================================== FAILURES ===================================
2019-10-21T13:06:45.6373690Z ________________________ test_pre_commit_python_sphinx _________________________
2019-10-21T13:06:45.6374290Z 
2019-10-21T13:06:45.6374770Z cookies = <pytest_cookies.plugin.Cookies object at 0x108e5d790>
2019-10-21T13:06:45.6378350Z basic_project_dict = {'_copy_without_render': ['.mywaflib', '*.bib', 'src_matlab/library/matlab-json/*', 'src_stata/library/stata/ado_ext/*'], 'add_basic_pre_commit_hooks': 'y', 'add_intrusive_pre_commit': 'y', 'affiliation': 'Universität Hintertupfingen', ...}
2019-10-21T13:06:45.6378610Z 
2019-10-21T13:06:45.6378960Z     def test_pre_commit_python_sphinx(cookies, basic_project_dict):
2019-10-21T13:06:45.6379110Z         basic_project_dict["set_up_git"] = "y"
2019-10-21T13:06:45.6379360Z         basic_project_dict["make_initial_commit"] = "y"
2019-10-21T13:06:45.6379510Z         basic_project_dict["add_basic_pre_commit_hooks"] = "y"
2019-10-21T13:06:45.6382000Z         basic_project_dict["add_intrusive_pre_commit"] = "y"
2019-10-21T13:06:45.6382330Z         basic_project_dict["configure_running_sphinx_from_waf"] = "y"
2019-10-21T13:06:45.6397850Z         result = cookies.bake(extra_context=basic_project_dict)
2019-10-21T13:06:45.6398120Z >       _check_pre_commit(result)
2019-10-21T13:06:45.6398250Z 
2019-10-21T13:06:45.6398370Z tests/test_pre_commit.py:42: 
2019-10-21T13:06:45.6398600Z _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
2019-10-21T13:06:45.6398710Z 
2019-10-21T13:06:45.6399950Z result = <Result /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/pytest-of-vsts/pytest-0/test_pre_commit_python_sphinx0/cookies/bake00/research_project>
2019-10-21T13:06:45.6400110Z 
2019-10-21T13:06:45.6400300Z     def _check_pre_commit(result):
2019-10-21T13:06:45.6400430Z         subprocess.Popen(
2019-10-21T13:06:45.6401160Z             "pre-commit install",
2019-10-21T13:06:45.6401310Z             stdout=subprocess.PIPE,
2019-10-21T13:06:45.6401430Z             stderr=subprocess.PIPE,
2019-10-21T13:06:45.6401630Z             shell=True,
2019-10-21T13:06:45.6401750Z             cwd=result.project,
2019-10-21T13:06:45.6401980Z         )
2019-10-21T13:06:45.6402090Z         c = subprocess.Popen(
2019-10-21T13:06:45.6402890Z             "pre-commit run --all-files",
2019-10-21T13:06:45.6417140Z             stdout=subprocess.PIPE,
2019-10-21T13:06:45.6417290Z             stderr=subprocess.PIPE,
2019-10-21T13:06:45.6417350Z             shell=True,
2019-10-21T13:06:45.6417540Z             cwd=result.project,
2019-10-21T13:06:45.6417600Z         )
2019-10-21T13:06:45.6417770Z         output, error = c.communicate()
2019-10-21T13:06:45.6417840Z     
2019-10-21T13:06:45.6417980Z         failure = re.search(r"Failed", str(output))
2019-10-21T13:06:45.6418060Z         if failure is not None:
2019-10-21T13:06:45.6418160Z             print(output)
2019-10-21T13:06:45.6418770Z             raise AssertionError("Some pre-commit failed.")
2019-10-21T13:06:45.6418920Z         # Not trivial to check for empty string if it might be binary stream
2019-10-21T13:06:45.6419000Z         assert len(error) == 0, "{}".format(str(error))
2019-10-21T13:06:45.6419130Z >       assert re.search(
2019-10-21T13:06:45.6419190Z             r"(Passed|Failed)", str(output)
2019-10-21T13:06:45.6419630Z         ), "All files skipped by pre-commit."
2019-10-21T13:06:45.6420040Z E       AssertionError: All files skipped by pre-commit.
2019-10-21T13:06:45.6420330Z E       assert None
2019-10-21T13:06:45.6421080Z E        +  where None = <function search at 0x10714eb00>('(Passed|Failed)', 'b"An unexpected error has occurred: FileExistsError: [Errno 17] File exists: \'/Users/vsts/.cache/pre-commit\'\\nCheck the log at /Users/vsts/.cache/pre-commit/pre-commit.log\\n"')
2019-10-21T13:06:45.6421370Z E        +    where <function search at 0x10714eb00> = re.search
2019-10-21T13:06:45.6422110Z E        +    and   'b"An unexpected error has occurred: FileExistsError: [Errno 17] File exists: \'/Users/vsts/.cache/pre-commit\'\\nCheck the log at /Users/vsts/.cache/pre-commit/pre-commit.log\\n"' = str(b"An unexpected error has occurred: FileExistsError: [Errno 17] File exists: '/Users/vsts/.cache/pre-commit'\nCheck the log at /Users/vsts/.cache/pre-commit/pre-commit.log\n")
2019-10-21T13:06:45.6422330Z 
2019-10-21T13:06:45.6432870Z tests/test_pre_commit.py:30: AssertionError
2019-10-21T13:06:45.6434240Z ----------------------------- Captured stdout call -----------------------------
2019-10-21T13:06:45.6435300Z Initialized empty Git repository in /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/pytest-of-vsts/pytest-0/test_pre_commit_python_sphinx0/cookies/bake00/research_project/.git/
2019-10-21T13:06:45.6436360Z [master (root-commit) 9f60b50] 'Initial commit with template from https://github.com/hmgaudecker/econ-project-templates'
2019-10-21T13:06:45.6436670Z  224 files changed, 43497 insertions(+)
2019-10-21T13:06:45.6436820Z  create mode 100755 .gitignore
2019-10-21T13:06:45.6437020Z  create mode 100755 .mywaflib/waflib/Build.py
2019-10-21T13:06:45.6437160Z  create mode 100755 .mywaflib/waflib/ConfigSet.py
2019-10-21T13:06:45.6437290Z  create mode 100755 .mywaflib/waflib/Configure.py
2019-10-21T13:06:45.6438000Z  create mode 100755 .mywaflib/waflib/Context.py
2019-10-21T13:06:45.6438130Z  create mode 100755 .mywaflib/waflib/Errors.py
2019-10-21T13:06:45.6438360Z  create mode 100755 .mywaflib/waflib/Logs.py
2019-10-21T13:06:45.6438500Z  create mode 100755 .mywaflib/waflib/Node.py
2019-10-21T13:06:45.6438690Z  create mode 100755 .mywaflib/waflib/Options.py
2019-10-21T13:06:45.6439020Z  create mode 100755 .mywaflib/waflib/Runner.py
2019-10-21T13:06:45.6439280Z  create mode 100755 .mywaflib/waflib/Scripting.py
2019-10-21T13:06:45.6439400Z  create mode 100755 .mywaflib/waflib/Task.py
2019-10-21T13:06:45.6439590Z  create mode 100755 .mywaflib/waflib/TaskGen.py
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2019-10-21T13:06:45.6502740Z  create mode 100755 .mywaflib/waflib/extras/biber.py
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2019-10-21T13:06:45.6505500Z  create mode 100755 .mywaflib/waflib/extras/eclipse.py
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2019-10-21T13:06:45.6505750Z  create mode 100755 .mywaflib/waflib/extras/fc_bgxlf.py
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2019-10-21T13:06:45.6520190Z  create mode 100755 wscript
2019-10-21T13:06:45.6520290Z =============================== warnings summary ===============================
2019-10-21T13:06:45.6520370Z tests/test_pre_commit.py::test_pre_commit_python_sphinx
2019-10-21T13:06:45.6520510Z   /Users/vsts/agent/2.158.0/work/1/s/tests/test_pre_commit.py:30: PytestAssertRewriteWarning: asserting the value None, please use "assert is None"
2019-10-21T13:06:45.6520600Z     assert re.search(
2019-10-21T13:06:45.6520640Z 
2019-10-21T13:06:45.6520740Z tests/test_waf.py::test_waf_configure_stata
2019-10-21T13:06:45.6520810Z tests/test_waf.py::test_waf_configure_matlab
2019-10-21T13:06:45.6520920Z tests/test_waf.py::test_waf_configure_julia
2019-10-21T13:06:45.6521010Z   /Users/vsts/agent/2.158.0/work/1/s/tests/test_waf.py:26: PytestAssertRewriteWarning: asserting the value None, please use "assert is None"
2019-10-21T13:06:45.6521580Z     assert re.search(r"configure\\?[\'\"] finished successfully", str(log_configure))
2019-10-21T13:06:45.6521660Z 
2019-10-21T13:06:45.6521770Z tests/test_waf.py::test_waf_build_stata
2019-10-21T13:06:45.6521840Z tests/test_waf.py::test_waf_build_matlab
2019-10-21T13:06:45.6521930Z tests/test_waf.py::test_waf_build_julia
2019-10-21T13:06:45.6522020Z   /Users/vsts/agent/2.158.0/work/1/s/tests/test_waf.py:37: PytestAssertRewriteWarning: asserting the value None, please use "assert is None"
2019-10-21T13:06:45.6522520Z     assert re.search(r"build\\?[\'\"] finished successfully", str(log_build))
2019-10-21T13:06:45.6522590Z 
2019-10-21T13:06:45.6523000Z -- Docs: https://docs.pytest.org/en/latest/warnings.html
2019-10-21T13:06:45.6523140Z ======= 1 failed, 20 passed, 6 xfailed, 7 warnings in 382.29s (0:06:22) ========
2019-10-21T13:06:45.7609880Z ##[error]Bash exited with code '1'.
2019-10-21T13:06:45.7665740Z ##[section]Finishing: Run pytests.

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